1 Response_reg#1
7-115 aa · 109 aa · 21.2% of protein
Raw token
Response_reg:7:1.19e-25:115:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF1093_RS01955
Response regulator, unclassified
Hungatella hathewayi 12489931 · GCF_000371445
ClassRRTypeunclassifiedLength513 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_000371445#HMPREF1093_RS01955Stable P2CS identifier used across views.
GenomeGCF_000371445Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length513 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage183 / 513 aa (35.7%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa513 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
422-460 aa · 39 aa · 7.6% of protein
Raw token
HTH_AraC:422:0.0000014:460:39:423 HTH_AraC#3
475-509 aa · 35 aa · 6.8% of protein
Raw token
HTH_AraC:475:0.000000000509:509:35:42- Raw architecture: Response_reg:7:1.19e-25:115:109:111#HTH_AraC:422:0.0000014:460:39:42#HTH_AraC:475:0.000000000509:509:35:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_000371445::NZ_KB850950.1::G00012
Group size33 locus tags listed below.
HK / RR1 / 2Counts resolved for the local TCS neighborhood.
Context span466485-471694Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF1093_00388RefSeq proteinWP_002600202.1
Context group ID
GCF_000371445::NZ_KB850950.1::G00012Context members
HMPREF1093_RS01950HMPREF1093_RS01955HMPREF1093_RS01960
Partner locus tags
HMPREF1093_RS01950HMPREF1093_RS01955HMPREF1093_RS01960
Partner old locus tags
HMPREF1093_00386HMPREF1093_00388HMPREF1093_00389
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_002600202.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF1093_RS01955Primary locus identifier stored in the genes table.
Old locus tagHMPREF1093_00388Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB850950.1Sequence record reported by the local genomic context database.
Genomic interval468 405-469 946 nt1 542 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span466 485-471 694 ntGCF_000371445::NZ_KB850950.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000371445::NZ_KB850950.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB850950.1All displayed genes belong to this local TCS context.
Neighborhood span466 485-471 694 nt5 210 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
466 485 nt471 694 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
HMPREF1093_RS01950GCF_000371445#HMPREF1093_RS01950
RRPleD_VieA
466 485-468 173 nt · Reverse (-)
HMPREF1093_RS01955GCF_000371445#HMPREF1093_RS01955
RRunclassifiedCurrent focus
468 405-469 946 nt · Reverse (-)
HMPREF1093_RS01960GCF_000371445#HMPREF1093_RS01960
HKClassic
469 979-471 694 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000371445#HMPREF1093_RS01955The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0141155
Simplified PFAM architecture for RROC_0141155
PFAM domain coverage: 190 / 513 aa (37.0%)
1 aa513 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[6-116] | HTH_18[433-511]
- Domain count: 2
- Matched identifier: RROC_0141155
- Positioned domains: Response_reg 6-116 ; Response_reg 6-116 ; HTH_18 433-511 ; HTH_18 433-511
Cluster members and taxonomy
Representative gene: GCF_000371445#HMPREF1093_RS01955
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 999 412 · GCF_000371445
AssemblyClos_hath_12489931_V1 · Scaffoldhaploid
Genome composition6 873 024 bp · 49,5% GCHungatella hathewayi 12489931
Signal transduction countsGenes 266 · HK 130 · RR 132CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key