1 Response_reg#1
7-120 aa · 114 aa · 20.3% of protein
Raw token
Response_reg:7:5.65e-26:120:116:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF1093_RS01950
Response regulator, PleD_VieA family
Hungatella hathewayi 12489931 · GCF_000371445
ClassRRTypePleD_VieALength562 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_000371445#HMPREF1093_RS01950Stable P2CS identifier used across views.
GenomeGCF_000371445Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regGGDEFEAL
Protein length562 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage463 / 562 aa (82.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 GGDEF,1 EALSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa562 aa
Domain-by-domain annotation3 items
2 GGDEF#2
137-248 aa · 112 aa · 19.9% of protein
Raw token
GGDEF:137:9.34e-16:248:115:1603 EAL#3
303-539 aa · 237 aa · 42.2% of protein
Raw token
EAL:303:1.35e-72:539:237:235- Raw architecture: Response_reg:7:5.65e-26:120:116:111#GGDEF:137:9.34e-16:248:115:160#EAL:303:1.35e-72:539:237:235
- Domain description: 1 Response_reg,1 GGDEF,1 EAL
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_000371445::NZ_KB850950.1::G00012
Group size33 locus tags listed below.
HK / RR1 / 2Counts resolved for the local TCS neighborhood.
Context span466485-471694Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF1093_00386RefSeq proteinWP_002600200.1
Context group ID
GCF_000371445::NZ_KB850950.1::G00012Context members
HMPREF1093_RS01950HMPREF1093_RS01955HMPREF1093_RS01960
Partner locus tags
HMPREF1093_RS01950HMPREF1093_RS01955HMPREF1093_RS01960
Partner old locus tags
HMPREF1093_00386HMPREF1093_00388HMPREF1093_00389
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_002600200.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF1093_RS01950Primary locus identifier stored in the genes table.
Old locus tagHMPREF1093_00386Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB850950.1Sequence record reported by the local genomic context database.
Genomic interval466 485-468 173 nt1 689 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span466 485-471 694 ntGCF_000371445::NZ_KB850950.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000371445::NZ_KB850950.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB850950.1All displayed genes belong to this local TCS context.
Neighborhood span466 485-471 694 nt5 210 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
466 485 nt471 694 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
HMPREF1093_RS01950GCF_000371445#HMPREF1093_RS01950
RRPleD_VieACurrent focus
466 485-468 173 nt · Reverse (-)
HMPREF1093_RS01955GCF_000371445#HMPREF1093_RS01955
RRunclassified
468 405-469 946 nt · Reverse (-)
HMPREF1093_RS01960GCF_000371445#HMPREF1093_RS01960
HKClassic
469 979-471 694 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000371445#HMPREF1093_RS01950The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GGDEF + EAL3 domains in the representative PFAM annotation.
PFAM architecture for RROC_0058026
Simplified PFAM architecture for RROC_0058026
PFAM domain coverage: 491 / 562 aa (87.4%)
1 aa562 aa
Response_regGGDEFEAL
- Simplified architecture: Response_reg + GGDEF + EAL
- Raw architecture: Response_reg[7-119] | GGDEF[136-278] | EAL[305-539]
- Domain count: 3
- Matched identifier: RROC_0058026
- Positioned domains: Response_reg 7-119 ; Response_reg 7-119 ; GGDEF 136-278 ; GGDEF 136-278 ; EAL 305-539 ; EAL 305-539
Cluster members and taxonomy
Representative gene: GCF_000371445#HMPREF1093_RS01950
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 999 412 · GCF_000371445
AssemblyClos_hath_12489931_V1 · Scaffoldhaploid
Genome composition6 873 024 bp · 49,5% GCHungatella hathewayi 12489931
Signal transduction countsGenes 266 · HK 130 · RR 132CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key