1 dCache_1#1
129-306 aa · 178 aa · 28.1% of protein
Raw token
dCache_1:129:0.000013:306:179:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF1093_RS01170
Histidine kinase, Classic
Hungatella hathewayi 12489931 · GCF_000371445
ClassHKTypeClassicLength633 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000371445#HMPREF1093_RS01170Stable P2CS identifier used across views.
GenomeGCF_000371445Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length633 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage435 / 633 aa (68.7%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa633 aa
Domain-by-domain annotation4 items
2 HAMP#2
324-393 aa · 70 aa · 11.1% of protein
Raw token
HAMP:324:0.000000000000402:393:70:693 His_kinase#3
410-489 aa · 80 aa · 12.6% of protein
Raw token
His_kinase:410:2.51e-33:489:80:804 HATPase_c#4
510-616 aa · 107 aa · 16.9% of protein
Raw token
HATPase_c:510:0.00000000459:616:108:109- Raw architecture: dCache_1:129:0.000013:306:179:195#HAMP:324:0.000000000000402:393:70:69#His_kinase:410:2.51e-33:489:80:80#HATPase_c:510:0.00000000459:616:108:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000371445::NZ_KB850950.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span282534-286060Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF1093_00229RefSeq proteinWP_002600043.1
Context group ID
GCF_000371445::NZ_KB850950.1::G00007Context members
HMPREF1093_RS01170HMPREF1093_RS01175
Partner locus tags
HMPREF1093_RS01170HMPREF1093_RS01175
Partner old locus tags
HMPREF1093_00229HMPREF1093_00230
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002600043.1Primary protein accession used for annex mappings.
UniProt accessionA0A6N3AM33Primary UniProt accession resolved in the annex database.
UniProt IDA0A6N3AM33_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF1093_RS01170Primary locus identifier stored in the genes table.
Old locus tagHMPREF1093_00229Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB850950.1Sequence record reported by the local genomic context database.
Genomic interval282 534-284 435 nt1 902 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span282 534-286 060 ntGCF_000371445::NZ_KB850950.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000371445::NZ_KB850950.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB850950.1All displayed genes belong to this local TCS context.
Neighborhood span282 534-286 060 nt3 527 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
282 534 nt286 060 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF1093_RS01170GCF_000371445#HMPREF1093_RS01170
HKClassicCurrent focus
282 534-284 435 nt · Forward (+)
HMPREF1093_RS01175GCF_000371445#HMPREF1093_RS01175
RRunclassified
284 432-286 060 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000371445#HMPREF1093_RS01170The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0938565
Simplified PFAM architecture for HKOC_0938565
PFAM domain coverage: 236 / 633 aa (37.3%)
1 aa633 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[344-394] | His_kinase[411-487] | HATPase_c[510-617]
- Domain count: 3
- Matched identifier: HKOC_0938565
- Positioned domains: HAMP 344-394 ; His_kinase 411-487 ; HATPase_c 510-617
Cluster members and taxonomy
Representative gene: GCF_000371445#HMPREF1093_RS01170
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 999 412 · GCF_000371445
AssemblyClos_hath_12489931_V1 · Scaffoldhaploid
Genome composition6 873 024 bp · 49,5% GCHungatella hathewayi 12489931
Signal transduction countsGenes 266 · HK 130 · RR 132CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key