1 Response_reg#1
4-117 aa · 114 aa · 23.3% of protein
Raw token
Response_reg:4:7.97e-29:117:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF1093_RS00620
Response regulator, unclassified
Hungatella hathewayi 12489931 · GCF_000371445
ClassRRTypeunclassifiedLength490 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000371445#HMPREF1093_RS00620Stable P2CS identifier used across views.
GenomeGCF_000371445Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length490 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage191 / 490 aa (39.0%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 HTH_AraC#2
395-435 aa · 41 aa · 8.4% of protein
Raw token
HTH_AraC:395:0.0000000037:435:41:423 HTH_AraC#3
450-485 aa · 36 aa · 7.3% of protein
Raw token
HTH_AraC:450:0.00000000000382:485:36:42- Raw architecture: Response_reg:4:7.97e-29:117:114:111#HTH_AraC:395:0.0000000037:435:41:42#HTH_AraC:450:0.00000000000382:485:36:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000371445::NZ_KB850950.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span141085-143866Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF1093_00119RefSeq proteinWP_002599933.1
Context group ID
GCF_000371445::NZ_KB850950.1::G00005Context members
HMPREF1093_RS00620HMPREF1093_RS00625
Partner locus tags
HMPREF1093_RS00620HMPREF1093_RS00625
Partner old locus tags
HMPREF1093_00119HMPREF1093_00120
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_002599933.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF1093_RS00620Primary locus identifier stored in the genes table.
Old locus tagHMPREF1093_00119Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB850950.1Sequence record reported by the local genomic context database.
Genomic interval141 085-142 557 nt1 473 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span141 085-143 866 ntGCF_000371445::NZ_KB850950.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000371445::NZ_KB850950.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB850950.1All displayed genes belong to this local TCS context.
Neighborhood span141 085-143 866 nt2 782 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
141 085 nt143 866 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF1093_RS00620GCF_000371445#HMPREF1093_RS00620
RRunclassifiedCurrent focus
141 085-142 557 nt · Reverse (-)
HMPREF1093_RS00625GCF_000371445#HMPREF1093_RS00625
HKClassic
142 529-143 866 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000371445#HMPREF1093_RS00620The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0168649
Simplified PFAM architecture for RROC_0168649
PFAM domain coverage: 191 / 490 aa (39.0%)
1 aa490 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-115] | HTH_18[408-486]
- Domain count: 2
- Matched identifier: RROC_0168649
- Positioned domains: Response_reg 4-115 ; Response_reg 4-115 ; HTH_18 408-486 ; HTH_18 408-486
Cluster members and taxonomy
Representative gene: GCF_000371445#HMPREF1093_RS00620
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 999 412 · GCF_000371445
AssemblyClos_hath_12489931_V1 · Scaffoldhaploid
Genome composition6 873 024 bp · 49,5% GCHungatella hathewayi 12489931
Signal transduction countsGenes 266 · HK 130 · RR 132CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key