1 PAS_3#1
322-388 aa · 67 aa · 5.5% of protein
Raw token
PAS_3:322:0.00000000127:388:67:89P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF1093_RS00305
Histidine kinase, Hybrid
Hungatella hathewayi 12489931 · GCF_000371445
ClassHKTypeHybridLength1210 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000371445#HMPREF1093_RS00305Stable P2CS identifier used across views.
GenomeGCF_000371445Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
PAS_3HisKAHATPase_cResponse_reg
Protein length1210 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage367 / 1210 aa (30.3%)Merged over positioned domains only.
Domain description1 PAS_3,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa1210 aa
Domain-by-domain annotation4 items
2 HisKA#2
832-897 aa · 66 aa · 5.5% of protein
Raw token
HisKA:832:0.00000000000000142:897:66:643 HATPase_c#3
945-1062 aa · 118 aa · 9.8% of protein
Raw token
HATPase_c:945:2.56e-31:1062:118:1094 Response_reg#4
1091-1206 aa · 116 aa · 9.6% of protein
Raw token
Response_reg:1091:8.82e-27:1206:116:111- Raw architecture: PAS_3:322:0.00000000127:388:67:89#HisKA:832:0.00000000000000142:897:66:64#HATPase_c:945:2.56e-31:1062:118:109#Response_reg:1091:8.82e-27:1206:116:111
- Domain description: 1 PAS_3,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000371445::NZ_KB850950.1::G00003
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span67029-70661Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF1093_00060RefSeq proteinWP_002599874.1
Context group ID
GCF_000371445::NZ_KB850950.1::G00003Context members
HMPREF1093_RS00305
Partner locus tags
HMPREF1093_RS00305
Partner old locus tags
HMPREF1093_00060
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_002599874.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF1093_RS00305Primary locus identifier stored in the genes table.
Old locus tagHMPREF1093_00060Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB850950.1Sequence record reported by the local genomic context database.
Genomic interval67 029-70 661 nt3 633 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span67 029-70 661 ntGCF_000371445::NZ_KB850950.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000371445::NZ_KB850950.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB850950.1All displayed genes belong to this local TCS context.
Neighborhood span67 029-70 661 nt3 633 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
67 029 nt70 661 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
HMPREF1093_RS00305GCF_000371445#HMPREF1093_RS00305
HKHybridCurrent focus
67 029-70 661 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000371445#HMPREF1093_RS00305The current gene is the representative for this cluster.
PFAM architecturePAS_8 + PAS_3 + HisKA + HATPase_c + Response_reg5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0152685
Simplified PFAM architecture for HKOC_0152685
PFAM domain coverage: 403 / 1210 aa (33.3%)
1 aa1210 aa
PAS_8PAS_3HisKAHATPase_cResponse_reg
- Simplified architecture: PAS_8 + PAS_3 + HisKA + HATPase_c + Response_reg
- Raw architecture: PAS_8[11-41] | PAS_3[322-395] | HisKA[832-897] | HATPase_c[946-1061] | Response_reg[1091-1206]
- Domain count: 5
- Matched identifier: HKOC_0152685
- Positioned domains: PAS_8 11-41 ; PAS_3 322-395 ; HisKA 832-897 ; HATPase_c 946-1061 ; Response_reg 1091-1206
Cluster members and taxonomy
Representative gene: GCF_000371445#HMPREF1093_RS00305
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 999 412 · GCF_000371445
AssemblyClos_hath_12489931_V1 · Scaffoldhaploid
Genome composition6 873 024 bp · 49,5% GCHungatella hathewayi 12489931
Signal transduction countsGenes 266 · HK 130 · RR 132CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key