1 Response_reg#1
5-117 aa · 113 aa · 20.0% of protein
Raw token
Response_reg:5:8.66e-27:117:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF1093_RS00260
Response regulator, unclassified
Hungatella hathewayi 12489931 · GCF_000371445
ClassRRTypeunclassifiedLength565 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000371445#HMPREF1093_RS00260Stable P2CS identifier used across views.
GenomeGCF_000371445Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length565 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage187 / 565 aa (33.1%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa565 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
464-504 aa · 41 aa · 7.3% of protein
Raw token
HTH_AraC:464:0.00000789:504:41:423 HTH_AraC#3
522-554 aa · 33 aa · 5.8% of protein
Raw token
HTH_AraC:522:0.00000504:554:33:42- Raw architecture: Response_reg:5:8.66e-27:117:113:111#HTH_AraC:464:0.00000789:504:41:42#HTH_AraC:522:0.00000504:554:33:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000371445::NZ_KB850950.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span55547-58988Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF1093_00051RefSeq proteinWP_002599865.1
Context group ID
GCF_000371445::NZ_KB850950.1::G00002Context members
HMPREF1093_RS00260HMPREF1093_RS00265
Partner locus tags
HMPREF1093_RS00260HMPREF1093_RS00265
Partner old locus tags
HMPREF1093_00051HMPREF1093_00052
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_002599865.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF1093_RS00260Primary locus identifier stored in the genes table.
Old locus tagHMPREF1093_00051Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB850950.1Sequence record reported by the local genomic context database.
Genomic interval55 547-57 244 nt1 698 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span55 547-58 988 ntGCF_000371445::NZ_KB850950.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000371445::NZ_KB850950.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB850950.1All displayed genes belong to this local TCS context.
Neighborhood span55 547-58 988 nt3 442 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
55 547 nt58 988 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF1093_RS00260GCF_000371445#HMPREF1093_RS00260
RRunclassifiedCurrent focus
55 547-57 244 nt · Reverse (-)
HMPREF1093_RS00265GCF_000371445#HMPREF1093_RS00265
HKClassic
57 246-58 988 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000371445#HMPREF1093_RS00260The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0055906
Simplified PFAM architecture for RROC_0055906
PFAM domain coverage: 191 / 565 aa (33.8%)
1 aa565 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[5-116] | HTH_18[477-555]
- Domain count: 2
- Matched identifier: RROC_0055906
- Positioned domains: Response_reg 5-116 ; Response_reg 5-116 ; HTH_18 477-555 ; HTH_18 477-555
Cluster members and taxonomy
Representative gene: GCF_000371445#HMPREF1093_RS00260
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 999 412 · GCF_000371445
AssemblyClos_hath_12489931_V1 · Scaffoldhaploid
Genome composition6 873 024 bp · 49,5% GCHungatella hathewayi 12489931
Signal transduction countsGenes 266 · HK 130 · RR 132CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key