1 Response_reg#1
4-114 aa · 111 aa · 47.8% of protein
Raw token
Response_reg:4:7.16e-32:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ECBCE002MS12_RS05080
Response regulator OmpR family
Escherichia coli BCE002_MS12 · GCF_000354295
ClassRRTypeOmpRLength232 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000354295#ECBCE002MS12_RS05080Stable P2CS identifier used across views.
GenomeGCF_000354295Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length232 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 232 aa (80.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa232 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
146-221 aa · 76 aa · 32.8% of protein
Raw token
Trans_reg_C:146:1.05e-29:221:77:77- Raw architecture: Response_reg:4:7.16e-32:114:111:111#Trans_reg_C:146:1.05e-29:221:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000354295::NZ_AQDA01000081.1::G00029
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span164183-166260Genomic interval covered by the local TCS group.
Identifiers
Old locus tagECBCE002MS12_3683RefSeq proteinWP_001701586.1
Context group ID
GCF_000354295::NZ_AQDA01000081.1::G00029Context members
ECBCE002MS12_RS0124770ECBCE002MS12_RS05080
Partner locus tags
ECBCE002MS12_RS0124770ECBCE002MS12_RS05080
Partner old locus tags
ECBCE002MS12_3682ECBCE002MS12_3683
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_001701586.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagECBCE002MS12_RS05080Primary locus identifier stored in the genes table.
Old locus tagECBCE002MS12_3683Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AQDA01000081.1Sequence record reported by the local genomic context database.
Genomic interval165 562-166 260 nt699 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span164 183-166 260 ntGCF_000354295::NZ_AQDA01000081.1::G00029
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000354295::NZ_AQDA01000081.1::G00029Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AQDA01000081.1All displayed genes belong to this local TCS context.
Neighborhood span164 183-166 260 nt2 078 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
164 183 nt166 260 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ECBCE002MS12_RS0124770GCF_000354295#ECBCE002MS12_RS0124770
HKClassic
164 183-165 529 nt · Reverse (-)
ECBCE002MS12_RS05080GCF_000354295#ECBCE002MS12_RS05080
RROmpRCurrent focus
165 562-166 260 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000354295#ECBCE002MS12_RS05080The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1121027
Simplified PFAM architecture for RROC_1121027
PFAM domain coverage: 187 / 232 aa (80.6%)
1 aa232 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-114] | Trans_reg_C[146-221]
- Domain count: 2
- Matched identifier: RROC_1121027
- Positioned domains: Response_reg 4-114 ; Response_reg 4-114 ; Trans_reg_C 146-221 ; Trans_reg_C 146-221
Cluster members and taxonomy
Representative gene: GCF_000354295#ECBCE002MS12_RS05080
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 116 112 · GCF_000354295
AssemblyASM35429v1 · Contighaploid
Genome composition4 946 441 bp · 50,5% GCEscherichia coli BCE002_MS12
Signal transduction countsGenes 64 · HK 31 · RR 33CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusEscherichia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Escherichia
Related genes
Preview from the same derived genome key