1 HisKA#1
208-273 aa · 66 aa · 11.5% of protein
Raw token
HisKA:208:0.000000311:273:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
C201_RS00835
Histidine kinase, Hybrid
Escherichia coli S17 · GCF_000340255
ClassHKTypeHybridLength574 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000340255#C201_RS00835Stable P2CS identifier used across views.
GenomeGCF_000340255Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length574 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage279 / 574 aa (48.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa574 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
318-428 aa · 111 aa · 19.3% of protein
Raw token
HATPase_c:318:4.52e-28:428:111:1093 Response_reg#3
454-555 aa · 102 aa · 17.8% of protein
Raw token
Response_reg:454:5.72e-19:555:109:111- Raw architecture: HisKA:208:0.000000311:273:66:64#HATPase_c:318:4.52e-28:428:111:109#Response_reg:454:5.72e-19:555:109:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000340255::NZ_AOGN01000159.1::G00037
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span4795-6519Genomic interval covered by the local TCS group.
Identifiers
Old locus tagC201_21722RefSeq proteinWP_001776103.1
Context group ID
GCF_000340255::NZ_AOGN01000159.1::G00037Context members
C201_RS00835
Partner locus tags
C201_RS00835
Partner old locus tags
C201_21722
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_001776103.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagC201_RS00835Primary locus identifier stored in the genes table.
Old locus tagC201_21722Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AOGN01000159.1Sequence record reported by the local genomic context database.
Genomic interval4 795-6 519 nt1 725 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span4 795-6 519 ntGCF_000340255::NZ_AOGN01000159.1::G00037
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000340255::NZ_AOGN01000159.1::G00037Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AOGN01000159.1All displayed genes belong to this local TCS context.
Neighborhood span4 795-6 519 nt1 725 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 795 nt6 519 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
C201_RS00835GCF_000340255#C201_RS00835
HKHybridCurrent focus
4 795-6 519 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000340255#C201_RS00835The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1192991
Simplified PFAM architecture for HKOC_1192991
PFAM domain coverage: 276 / 574 aa (48.1%)
1 aa574 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[209-273] | HATPase_c[319-427] | Response_reg[454-555]
- Domain count: 3
- Matched identifier: HKOC_1192991
- Positioned domains: HisKA 209-273 ; HATPase_c 319-427 ; Response_reg 454-555
Cluster members and taxonomy
Representative gene: GCF_000340255#C201_RS00835
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 227 813 · GCF_000340255
AssemblyS17 · Contighaploid
Genome composition4 591 470 bp · 51,0% GCEscherichia coli S17
Signal transduction countsGenes 62 · HK 29 · RR 33CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusEscherichia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Escherichia
Related genes
Preview from the same derived genome key