1 BetR#1
32-165 aa · 134 aa · 44.1% of protein
Raw token
BetR:32:0.00000000000544:165:151:144P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
C201_RS00820
Response regulator BetR family
Escherichia coli S17 · GCF_000340255
ClassRRTypeBetRLength304 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000340255#C201_RS00820Stable P2CS identifier used across views.
GenomeGCF_000340255Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Domain signature
Compact overview inferred from the domain field
BetRResponse_reg
Protein length304 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage213 / 304 aa (70.1%)Merged over positioned domains only.
Domain description1 BetR,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa304 aa
Domain-by-domain annotation2 items
2 Response_reg#2
184-262 aa · 79 aa · 26.0% of protein
Raw token
Response_reg:184:0.000000309:262:79:111- Raw architecture: BetR:32:0.00000000000544:165:151:144#Response_reg:184:0.000000309:262:79:111
- Domain description: 1 BetR,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000340255::NZ_AOGN01000159.1::G00038
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span7984-8898Genomic interval covered by the local TCS group.
Identifiers
Old locus tagC201_21737RefSeq proteinWP_000891983.1
Context group ID
GCF_000340255::NZ_AOGN01000159.1::G00038Context members
C201_RS00820
Partner locus tags
C201_RS00820
Partner old locus tags
C201_21737
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000891983.1Primary protein accession used for annex mappings.
UniProt accessionA0A6D1SN38Primary UniProt accession resolved in the annex database.
UniProt IDA0A6D1SN38_SALETDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagC201_RS00820Primary locus identifier stored in the genes table.
Old locus tagC201_21737Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AOGN01000159.1Sequence record reported by the local genomic context database.
Genomic interval7 984-8 898 nt915 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span7 984-8 898 ntGCF_000340255::NZ_AOGN01000159.1::G00038
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000340255::NZ_AOGN01000159.1::G00038Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AOGN01000159.1All displayed genes belong to this local TCS context.
Neighborhood span7 984-8 898 nt915 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
7 984 nt8 898 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
C201_RS00820GCF_000340255#C201_RS00820
RRBetRCurrent focus
7 984-8 898 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000008105#SCH_RS23760Use this link to inspect the representative gene detail.
PFAM architectureBetR + Response_reg2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0564950
Simplified PFAM architecture for RROC_0564950
PFAM domain coverage: 238 / 304 aa (78.3%)
1 aa304 aa
BetRResponse_reg
- Simplified architecture: BetR + Response_reg
- Raw architecture: BetR[36-165] | Response_reg[184-291]
- Domain count: 2
- Matched identifier: RROC_0564950
- Positioned domains: BetR 36-165 ; BetR 36-165 ; Response_reg 184-291 ; Response_reg 184-291
Cluster members and taxonomy
Representative gene: GCF_000008105#SCH_RS23760
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 227 813 · GCF_000340255
AssemblyS17 · Contighaploid
Genome composition4 591 470 bp · 51,0% GCEscherichia coli S17
Signal transduction countsGenes 62 · HK 29 · RR 33CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusEscherichia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Escherichia
Related genes
Preview from the same derived genome key