1 HisKA#1
146-209 aa · 64 aa · 17.3% of protein
Raw token
HisKA:146:0.000000000034:209:64:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EFS1_RS11615
Histidine kinase, Classic
Enterococcus faecalis str. Symbioflor 1 · GCF_000317915
ClassHKTypeClassicLength370 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000317915#EFS1_RS11615Stable P2CS identifier used across views.
GenomeGCF_000317915Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length370 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage173 / 370 aa (46.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa370 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
259-367 aa · 109 aa · 29.5% of protein
Raw token
HATPase_c:259:1.17e-24:367:110:109- Raw architecture: HisKA:146:0.000000000034:209:64:64#HATPase_c:259:1.17e-24:367:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000317915::NC_019770.1::G00011
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2313134-2314943Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEFS1_2267RefSeq proteinWP_002365141.1
Context group ID
GCF_000317915::NC_019770.1::G00011Context members
EFS1_RS11615EFS1_RS11620
Partner locus tags
EFS1_RS11615EFS1_RS11620
Partner old locus tags
EFS1_2267EFS1_2268
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002365141.1Primary protein accession used for annex mappings.
UniProt accessionA0A125W9B4Primary UniProt accession resolved in the annex database.
UniProt IDA0A125W9B4_ENTFLDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEFS1_RS11615Primary locus identifier stored in the genes table.
Old locus tagEFS1_2267Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_019770.1Sequence record reported by the local genomic context database.
Genomic interval2 313 134-2 314 246 nt1 113 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 313 134-2 314 943 ntGCF_000317915::NC_019770.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000317915::NC_019770.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_019770.1All displayed genes belong to this local TCS context.
Neighborhood span2 313 134-2 314 943 nt1 810 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 313 134 nt2 314 943 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EFS1_RS11615GCF_000317915#EFS1_RS11615
HKClassicCurrent focus
2 313 134-2 314 246 nt · Reverse (-)
EFS1_RS11620GCF_000317915#EFS1_RS11620
RROmpR
2 314 239-2 314 943 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000147215#HMPREF9504_RS04285Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2682651
Simplified PFAM architecture for HKOC_2682651
PFAM domain coverage: 173 / 370 aa (46.8%)
1 aa370 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[147-210] | HATPase_c[259-367]
- Domain count: 2
- Matched identifier: HKOC_2682651
- Positioned domains: HisKA 147-210 ; HATPase_c 259-367
Cluster members and taxonomy
Representative gene: GCF_000147215#HMPREF9504_RS04285
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 261 557 · GCF_000317915
AssemblyASM31791v1 · Complete Genomehaploid
Genome composition2 810 675 bp · 37,5% GCEnterococcus faecalis str. Symbioflor 1
Signal transduction countsGenes 30 · HK 14 · RR 16CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key