1 HisKA#1
119-178 aa · 60 aa · 17.6% of protein
Raw token
HisKA:119:0.0000000389:178:62:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EFS1_RS03885
Histidine kinase, Classic
Enterococcus faecalis str. Symbioflor 1 · GCF_000317915
ClassHKTypeClassicLength341 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000317915#EFS1_RS03885Stable P2CS identifier used across views.
GenomeGCF_000317915Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length341 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage170 / 341 aa (49.9%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa341 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
223-332 aa · 110 aa · 32.3% of protein
Raw token
HATPase_c:223:4.58e-28:332:110:109- Raw architecture: HisKA:119:0.0000000389:178:62:64#HATPase_c:223:4.58e-28:332:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000317915::NC_019770.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span771589-773302Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEFS1_0752RefSeq proteinWP_002388828.1
Context group ID
GCF_000317915::NC_019770.1::G00002Context members
EFS1_RS03880EFS1_RS03885
Partner locus tags
EFS1_RS03880EFS1_RS03885
Partner old locus tags
EFS1_0751EFS1_0752
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_002388828.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEFS1_RS03885Primary locus identifier stored in the genes table.
Old locus tagEFS1_0752Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_019770.1Sequence record reported by the local genomic context database.
Genomic interval772 277-773 302 nt1 026 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span771 589-773 302 ntGCF_000317915::NC_019770.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000317915::NC_019770.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_019770.1All displayed genes belong to this local TCS context.
Neighborhood span771 589-773 302 nt1 714 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
771 589 nt773 302 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EFS1_RS03880GCF_000317915#EFS1_RS03880
RROmpR
771 589-772 263 nt · Forward (+)
EFS1_RS03885GCF_000317915#EFS1_RS03885
HKClassicCurrent focus
772 277-773 302 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000148165#HMPREF9495_RS05290Use this link to inspect the representative gene detail.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2833934
Simplified PFAM architecture for HKOC_2833934
PFAM domain coverage: 109 / 341 aa (32.0%)
1 aa341 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[224-332]
- Domain count: 1
- Matched identifier: HKOC_2833934
- Positioned domains: HATPase_c 224-332
Cluster members and taxonomy
Representative gene: GCF_000148165#HMPREF9495_RS05290
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 261 557 · GCF_000317915
AssemblyASM31791v1 · Complete Genomehaploid
Genome composition2 810 675 bp · 37,5% GCEnterococcus faecalis str. Symbioflor 1
Signal transduction countsGenes 30 · HK 14 · RR 16CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key