1 Response_reg#1
4-113 aa · 110 aa · 48.5% of protein
Raw token
Response_reg:4:4.68e-34:113:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ECAD30_RS01205
Response regulator OmpR family
Escherichia coli AD30 · GCF_000304255
ClassRRTypeOmpRLength227 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000304255#ECAD30_RS01205Stable P2CS identifier used across views.
GenomeGCF_000304255Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length227 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 227 aa (81.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa227 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
146-221 aa · 76 aa · 33.5% of protein
Raw token
Trans_reg_C:146:7.04e-32:221:77:77- Raw architecture: Response_reg:4:4.68e-34:113:110:111#Trans_reg_C:146:7.04e-32:221:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000304255::NZ_AMSK01000047.1::G00037
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span12312-14433Genomic interval covered by the local TCS group.
Identifiers
Old locus tagECAD30_46770RefSeq proteinWP_000770953.1
Context group ID
GCF_000304255::NZ_AMSK01000047.1::G00037Context members
ECAD30_RS01205ECAD30_RS01200
Partner locus tags
ECAD30_RS01205ECAD30_RS01200
Partner old locus tags
ECAD30_46770ECAD30_46780
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000770953.1Primary protein accession used for annex mappings.
UniProt accessionA0A8E0FHH4Primary UniProt accession resolved in the annex database.
UniProt IDA0A8E0FHH4_ECOLXDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagECAD30_RS01205Primary locus identifier stored in the genes table.
Old locus tagECAD30_46770Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AMSK01000047.1Sequence record reported by the local genomic context database.
Genomic interval12 312-12 995 nt684 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span12 312-14 433 ntGCF_000304255::NZ_AMSK01000047.1::G00037
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000304255::NZ_AMSK01000047.1::G00037Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AMSK01000047.1All displayed genes belong to this local TCS context.
Neighborhood span12 312-14 433 nt2 122 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
12 312 nt14 433 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ECAD30_RS01205GCF_000304255#ECAD30_RS01205
RROmpRCurrent focus
12 312-12 995 nt · Forward (+)
ECAD30_RS01200GCF_000304255#ECAD30_RS01200
HKClassic
12 985-14 433 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1353987
Simplified PFAM architecture for RROC_1353987
PFAM domain coverage: 186 / 227 aa (81.9%)
1 aa227 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[146-221]
- Domain count: 2
- Matched identifier: RROC_1353987
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 146-221 ; Trans_reg_C 146-221
Cluster members and taxonomy
Representative gene: GCF_000005845#b0571
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 169 664 · GCF_000304255
AssemblyECAD30.1 · Contighaploid
Genome composition5 077 949 bp · 50,5% GCEscherichia coli AD30
Signal transduction countsGenes 62 · HK 30 · RR 32CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusEscherichia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Escherichia
Related genes
Preview from the same derived genome key