1 Response_reg#1
4-113 aa · 110 aa · 48.9% of protein
Raw token
Response_reg:4:5.93e-39:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ECAD30_RS01170
Response regulator OmpR family
Escherichia coli AD30 · GCF_000304255
ClassRRTypeOmpRLength225 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000304255#ECAD30_RS01170Stable P2CS identifier used across views.
GenomeGCF_000304255Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length225 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 225 aa (82.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa225 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-223 aa · 76 aa · 33.8% of protein
Raw token
Trans_reg_C:148:1.08e-26:223:76:77- Raw architecture: Response_reg:4:5.93e-39:113:111:111#Trans_reg_C:148:1.08e-26:223:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000304255::NZ_AMSK01000048.1::G00038
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span5007-8365Genomic interval covered by the local TCS group.
Identifiers
Old locus tagECAD30_46840RefSeq proteinWP_000186109.1
Context group ID
GCF_000304255::NZ_AMSK01000048.1::G00038Context members
ECAD30_RS01175ECAD30_RS01170
Partner locus tags
ECAD30_RS01175ECAD30_RS01170
Partner old locus tags
ECAD30_46830ECAD30_46840
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000186109.1Primary protein accession used for annex mappings.
UniProt accessionD3GXE2Primary UniProt accession resolved in the annex database.
UniProt IDD3GXE2_ECO44Display identifier provided by UniProt.
GO / PubMed6 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagECAD30_RS01170Primary locus identifier stored in the genes table.
Old locus tagECAD30_46840Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AMSK01000048.1Sequence record reported by the local genomic context database.
Genomic interval7 688-8 365 nt678 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span5 007-8 365 ntGCF_000304255::NZ_AMSK01000048.1::G00038
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000304255::NZ_AMSK01000048.1::G00038Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AMSK01000048.1All displayed genes belong to this local TCS context.
Neighborhood span5 007-8 365 nt3 359 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
5 007 nt8 365 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ECAD30_RS01175GCF_000304255#ECAD30_RS01175
HKClassic
5 007-7 691 nt · Forward (+)
ECAD30_RS01170GCF_000304255#ECAD30_RS01170
RROmpRCurrent focus
7 688-8 365 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000017765#ECHS_RS03615Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1462794
Simplified PFAM architecture for RROC_1462794
PFAM domain coverage: 185 / 225 aa (82.2%)
1 aa225 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[148-223]
- Domain count: 2
- Matched identifier: RROC_1462794
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 148-223 ; Trans_reg_C 148-223
Cluster members and taxonomy
Representative gene: GCF_000017765#ECHS_RS03615
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 169 664 · GCF_000304255
AssemblyECAD30.1 · Contighaploid
Genome composition5 077 949 bp · 50,5% GCEscherichia coli AD30
Signal transduction countsGenes 62 · HK 30 · RR 32CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusEscherichia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Escherichia
Related genes
Preview from the same derived genome key