1 Response_reg#1
5-89 aa · 85 aa · 34.3% of protein
Raw token
Response_reg:5:0.00000164:89:85:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF1347_RS07835
Response regulator LytTR family
Enterococcus faecium 504 · GCF_000295275
ClassRRTypeLytTRLength248 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000295275#HMPREF1347_RS07835Stable P2CS identifier used across views.
GenomeGCF_000295275Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length248 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage173 / 248 aa (69.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa248 aa
Domain-by-domain annotation2 items
2 LytTR#2
141-228 aa · 88 aa · 35.5% of protein
Raw token
LytTR:141:0.00000000952:228:91:98- Raw architecture: Response_reg:5:0.00000164:89:85:111#LytTR:141:0.00000000952:228:91:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000295275::NZ_JH811507.1::G00009
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span61423-62169Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF1347_00945RefSeq proteinWP_230078630.1
Context group ID
GCF_000295275::NZ_JH811507.1::G00009Context members
HMPREF1347_RS07835
Partner locus tags
HMPREF1347_RS07835
Partner old locus tags
HMPREF1347_00945
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_230078630.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF1347_RS07835Primary locus identifier stored in the genes table.
Old locus tagHMPREF1347_00945Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH811507.1Sequence record reported by the local genomic context database.
Genomic interval61 423-62 169 nt747 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span61 423-62 169 ntGCF_000295275::NZ_JH811507.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000295275::NZ_JH811507.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH811507.1All displayed genes belong to this local TCS context.
Neighborhood span61 423-62 169 nt747 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
61 423 nt62 169 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
HMPREF1347_RS07835GCF_000295275#HMPREF1347_RS07835
RRLytTRCurrent focus
61 423-62 169 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000295275#HMPREF1347_RS07835The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0743566
Simplified PFAM architecture for RROC_0743566
PFAM domain coverage: 191 / 248 aa (77.0%)
1 aa248 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[5-110] | LytTR[145-229]
- Domain count: 2
- Matched identifier: RROC_0743566
- Positioned domains: Response_reg 5-110 ; Response_reg 5-110 ; LytTR 145-229 ; LytTR 145-229
Cluster members and taxonomy
Representative gene: GCF_000295275#HMPREF1347_RS07835
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 134 805 · GCF_000295275
AssemblyASM29527v2 · Scaffoldhaploid
Genome composition2 617 730 bp · 38,0% GCEnterococcus faecium 504
Signal transduction countsGenes 35 · HK 18 · RR 17CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key