1 Response_reg#1
5-119 aa · 115 aa · 46.0% of protein
Raw token
Response_reg:5:0.000000000389:119:116:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF1347_RS06315
Response regulator LytTR family
Enterococcus faecium 504 · GCF_000295275
ClassRRTypeLytTRLength250 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000295275#HMPREF1347_RS06315Stable P2CS identifier used across views.
GenomeGCF_000295275Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length250 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage192 / 250 aa (76.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa250 aa
Domain-by-domain annotation2 items
2 LytTR#2
152-228 aa · 77 aa · 30.8% of protein
Raw token
LytTR:152:0.0000000000000785:228:82:98- Raw architecture: Response_reg:5:0.000000000389:119:116:111#LytTR:152:0.0000000000000785:228:82:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000295275::NZ_JH811488.1::G00005
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span103894-104646Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF1347_00604RefSeq proteinWP_002325334.1
Context group ID
GCF_000295275::NZ_JH811488.1::G00005Context members
HMPREF1347_RS06315
Partner locus tags
HMPREF1347_RS06315
Partner old locus tags
HMPREF1347_00604
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002325334.1Primary protein accession used for annex mappings.
UniProt accessionA7BIV8Primary UniProt accession resolved in the annex database.
UniProt IDA7BIV8_ENTFCDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF1347_RS06315Primary locus identifier stored in the genes table.
Old locus tagHMPREF1347_00604Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH811488.1Sequence record reported by the local genomic context database.
Genomic interval103 894-104 646 nt753 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span103 894-104 646 ntGCF_000295275::NZ_JH811488.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000295275::NZ_JH811488.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH811488.1All displayed genes belong to this local TCS context.
Neighborhood span103 894-104 646 nt753 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
103 894 nt104 646 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
HMPREF1347_RS06315GCF_000295275#HMPREF1347_RS06315
RRLytTRCurrent focus
103 894-104 646 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000295275#HMPREF1347_RS06315The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0722185
Simplified PFAM architecture for RROC_0722185
PFAM domain coverage: 209 / 250 aa (83.6%)
1 aa250 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[5-122] | LytTR[153-243]
- Domain count: 2
- Matched identifier: RROC_0722185
- Positioned domains: Response_reg 5-122 ; Response_reg 5-122 ; LytTR 153-243 ; LytTR 153-243
Cluster members and taxonomy
Representative gene: GCF_000295275#HMPREF1347_RS06315
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 134 805 · GCF_000295275
AssemblyASM29527v2 · Scaffoldhaploid
Genome composition2 617 730 bp · 38,0% GCEnterococcus faecium 504
Signal transduction countsGenes 35 · HK 18 · RR 17CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key