1 HisKA_3#1
172-235 aa · 64 aa · 17.8% of protein
Raw token
HisKA_3:172:7.88e-16:235:66:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF1347_RS06135
Histidine kinase, Classic
Enterococcus faecium 504 · GCF_000295275
ClassHKTypeClassicLength359 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000295275#HMPREF1347_RS06135Stable P2CS identifier used across views.
GenomeGCF_000295275Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length359 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage146 / 359 aa (40.7%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa359 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
275-356 aa · 82 aa · 22.8% of protein
Raw token
HATPase_c:275:0.00000123:356:100:109- Raw architecture: HisKA_3:172:7.88e-16:235:66:68#HATPase_c:275:0.00000123:356:100:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000295275::NZ_JH811488.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span67784-69519Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF1347_00565RefSeq proteinWP_002375879.1
Context group ID
GCF_000295275::NZ_JH811488.1::G00004Context members
HMPREF1347_RS06130HMPREF1347_RS06135
Partner locus tags
HMPREF1347_RS06130HMPREF1347_RS06135
Partner old locus tags
HMPREF1347_00564HMPREF1347_00565
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_002375879.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF1347_RS06135Primary locus identifier stored in the genes table.
Old locus tagHMPREF1347_00565Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH811488.1Sequence record reported by the local genomic context database.
Genomic interval68 410-69 519 nt1 110 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span67 784-69 519 ntGCF_000295275::NZ_JH811488.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000295275::NZ_JH811488.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH811488.1All displayed genes belong to this local TCS context.
Neighborhood span67 784-69 519 nt1 736 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
67 784 nt69 519 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF1347_RS06130GCF_000295275#HMPREF1347_RS06130
RRNarL
67 784-68 413 nt · Reverse (-)
HMPREF1347_RS06135GCF_000295275#HMPREF1347_RS06135
HKClassicCurrent focus
68 410-69 519 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000295275#HMPREF1347_RS06135The current gene is the representative for this cluster.
PFAM architectureHisKA_3 + HATPase_c_52 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2753128
Simplified PFAM architecture for HKOC_2753128
PFAM domain coverage: 113 / 359 aa (31.5%)
1 aa359 aa
HisKA_3HATPase_c_5
- Simplified architecture: HisKA_3 + HATPase_c_5
- Raw architecture: HisKA_3[172-235] | HATPase_c_5[306-354]
- Domain count: 2
- Matched identifier: HKOC_2753128
- Positioned domains: HisKA_3 172-235 ; HATPase_c_5 306-354
Cluster members and taxonomy
Representative gene: GCF_000295275#HMPREF1347_RS06135
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 134 805 · GCF_000295275
AssemblyASM29527v2 · Scaffoldhaploid
Genome composition2 617 730 bp · 38,0% GCEnterococcus faecium 504
Signal transduction countsGenes 35 · HK 18 · RR 17CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key