1 Response_reg#1
5-116 aa · 112 aa · 91.8% of protein
Raw token
Response_reg:5:8.86e-30:116:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IGE_RS19835
Response regulator, CheY family
Bacillus cereus HuB1-1 · GCF_000293725
ClassRRTypeCheYLength122 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000293725#IGE_RS19835Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length122 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage112 / 122 aa (91.8%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa122 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:5:8.86e-30:116:112:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000293725::NZ_JH804683.1::G00045
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3998421-4000937Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIGE_03967RefSeq proteinWP_000940569.1
Context group ID
GCF_000293725::NZ_JH804683.1::G00045Context members
IGE_RS19830IGE_RS19835
Partner locus tags
IGE_RS19830IGE_RS19835
Partner old locus tags
IGE_03966IGE_03967
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_000940569.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIGE_RS19835Primary locus identifier stored in the genes table.
Old locus tagIGE_03967Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH804683.1Sequence record reported by the local genomic context database.
Genomic interval4 000 569-4 000 937 nt369 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 998 421-4 000 937 ntGCF_000293725::NZ_JH804683.1::G00045
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000293725::NZ_JH804683.1::G00045Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH804683.1All displayed genes belong to this local TCS context.
Neighborhood span3 998 421-4 000 937 nt2 517 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 998 421 nt4 000 937 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
IGE_RS19830GCF_000293725#IGE_RS19830
HKCheA
3 998 421-4 000 439 nt · Reverse (-)
IGE_RS19835GCF_000293725#IGE_RS19835
RRCheYCurrent focus
4 000 569-4 000 937 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000293725#IGE_RS19835The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2403218
Simplified PFAM architecture for RROC_2403218
PFAM domain coverage: 112 / 122 aa (91.8%)
1 aa122 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[5-116]
- Domain count: 1
- Matched identifier: RROC_2403218
- Positioned domains: Response_reg 5-116 ; Response_reg 5-116
Cluster members and taxonomy
Representative gene: GCF_000293725#IGE_RS19835
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 053 207 · GCF_000293725
AssemblyBaci_cere_HuB1-1_V1 · Scaffoldhaploid
Genome composition5 743 953 bp · 35,0% GCBacillus cereus HuB1-1
Signal transduction countsGenes 112 · HK 61 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key