1 Response_reg#1
14-108 aa · 95 aa · 39.9% of protein
Raw token
Response_reg:14:0.000000129:108:97:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IGE_RS01750
Response regulator LytTR family
Bacillus cereus HuB1-1 · GCF_000293725
ClassRRTypeLytTRLength238 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000293725#IGE_RS01750Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length238 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage197 / 238 aa (82.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa238 aa
Domain-by-domain annotation2 items
2 LytTR#2
136-237 aa · 102 aa · 42.9% of protein
Raw token
LytTR:136:1.7e-29:237:102:98- Raw architecture: Response_reg:14:0.000000129:108:97:111#LytTR:136:1.7e-29:237:102:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000293725::NZ_JH804683.1::G00005
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span345505-346221Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIGE_00318RefSeq proteinWP_000698246.1
Context group ID
GCF_000293725::NZ_JH804683.1::G00005Context members
IGE_RS01750
Partner locus tags
IGE_RS01750
Partner old locus tags
IGE_00318
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_000698246.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIGE_RS01750Primary locus identifier stored in the genes table.
Old locus tagIGE_00318Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH804683.1Sequence record reported by the local genomic context database.
Genomic interval345 505-346 221 nt717 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span345 505-346 221 ntGCF_000293725::NZ_JH804683.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000293725::NZ_JH804683.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH804683.1All displayed genes belong to this local TCS context.
Neighborhood span345 505-346 221 nt717 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
345 505 nt346 221 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
IGE_RS01750GCF_000293725#IGE_RS01750
RRLytTRCurrent focus
345 505-346 221 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000291035#ICE_RS23030Use this link to inspect the representative gene detail.
PFAM architectureLytTR1 domain in the representative PFAM annotation.
PFAM architecture for RROC_0933298
Simplified PFAM architecture for RROC_0933298
PFAM domain coverage: 99 / 238 aa (41.6%)
1 aa238 aa
LytTR
- Simplified architecture: LytTR
- Raw architecture: LytTR[138-236]
- Domain count: 1
- Matched identifier: RROC_0933298
- Positioned domains: LytTR 138-236 ; LytTR 138-236
Cluster members and taxonomy
Representative gene: GCF_000291035#ICE_RS23030
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 053 207 · GCF_000293725
AssemblyBaci_cere_HuB1-1_V1 · Scaffoldhaploid
Genome composition5 743 953 bp · 35,0% GCBacillus cereus HuB1-1
Signal transduction countsGenes 112 · HK 61 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key