1 HAMP#1
171-241 aa · 71 aa · 15.1% of protein
Raw token
HAMP:171:0.0000000000169:241:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IG1_RS09205
Histidine kinase, Classic
Bacillus cereus HD73 · GCF_000293685
ClassHKTypeClassicLength471 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000293685#IG1_RS09205Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length471 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage245 / 471 aa (52.0%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa471 aa
Domain-by-domain annotation3 items
2 HisKA#2
245-312 aa · 68 aa · 14.4% of protein
Raw token
HisKA:245:0.0000000000000066:312:68:643 HATPase_c#3
362-467 aa · 106 aa · 22.5% of protein
Raw token
HATPase_c:362:6.7e-29:467:106:109- Raw architecture: HAMP:171:0.0000000000169:241:71:69#HisKA:245:0.0000000000000066:312:68:64#HATPase_c:362:6.7e-29:467:106:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000293685::NZ_JH804650.1::G00021
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1763671-1765757Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIG1_01791RefSeq proteinWP_000594475.1
Context group ID
GCF_000293685::NZ_JH804650.1::G00021Context members
IG1_RS09200IG1_RS09205
Partner locus tags
IG1_RS09200IG1_RS09205
Partner old locus tags
IG1_01790IG1_01791
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000594475.1Primary protein accession used for annex mappings.
UniProt accessionA0A9W5VF05Primary UniProt accession resolved in the annex database.
UniProt IDA0A9W5VF05_BACCEDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIG1_RS09205Primary locus identifier stored in the genes table.
Old locus tagIG1_01791Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH804650.1Sequence record reported by the local genomic context database.
Genomic interval1 764 342-1 765 757 nt1 416 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 763 671-1 765 757 ntGCF_000293685::NZ_JH804650.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000293685::NZ_JH804650.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH804650.1All displayed genes belong to this local TCS context.
Neighborhood span1 763 671-1 765 757 nt2 087 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 763 671 nt1 765 757 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
IG1_RS09200GCF_000293685#IG1_RS09200
RROmpR
1 763 671-1 764 345 nt · Forward (+)
IG1_RS09205GCF_000293685#IG1_RS09205
HKClassicCurrent focus
1 764 342-1 765 757 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000161575#BTHUR0006_RS12220Use this link to inspect the representative gene detail.
PFAM architectureArlS_N + HAMP + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1707119
Simplified PFAM architecture for HKOC_1707119
PFAM domain coverage: 350 / 471 aa (74.3%)
1 aa471 aa
ArlS_NHAMPHisKAHATPase_c
- Simplified architecture: ArlS_N + HAMP + HisKA + HATPase_c
- Raw architecture: ArlS_N[42-164] | HAMP[188-240] | HisKA[246-312] | HATPase_c[361-467]
- Domain count: 4
- Matched identifier: HKOC_1707119
- Positioned domains: ArlS_N 42-164 ; HAMP 188-240 ; HisKA 246-312 ; HATPase_c 361-467
Cluster members and taxonomy
Representative gene: GCF_000161575#BTHUR0006_RS12220
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 053 200 · GCF_000293685
AssemblyBaci_cere_HD73_V1 · Scaffoldhaploid
Genome composition5 879 192 bp · 35,0% GCBacillus cereus HD73
Signal transduction countsGenes 100 · HK 54 · RR 46CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key