1 Response_reg#1
5-114 aa · 110 aa · 48.0% of protein
Raw token
Response_reg:5:6.99e-36:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IG1_RS00445
Response regulator OmpR family
Bacillus cereus HD73 · GCF_000293685
ClassRRTypeOmpRLength229 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000293685#IG1_RS00445Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length229 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 229 aa (79.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa229 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
155-225 aa · 71 aa · 31.0% of protein
Raw token
Trans_reg_C:155:1.59e-28:225:74:77- Raw architecture: Response_reg:5:6.99e-36:114:111:111#Trans_reg_C:155:1.59e-28:225:74:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000293685::NZ_JH804650.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span69449-71985Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIG1_00063RefSeq proteinWP_000041848.1
Context group ID
GCF_000293685::NZ_JH804650.1::G00003Context members
IG1_RS00445IG1_RS00450
Partner locus tags
IG1_RS00445IG1_RS00450
Partner old locus tags
IG1_00063IG1_00064
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000041848.1Primary protein accession used for annex mappings.
UniProt accessionA0A9X6ICZ4Primary UniProt accession resolved in the annex database.
UniProt IDA0A9X6ICZ4_BACTUDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIG1_RS00445Primary locus identifier stored in the genes table.
Old locus tagIG1_00063Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH804650.1Sequence record reported by the local genomic context database.
Genomic interval69 449-70 138 nt690 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span69 449-71 985 ntGCF_000293685::NZ_JH804650.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000293685::NZ_JH804650.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH804650.1All displayed genes belong to this local TCS context.
Neighborhood span69 449-71 985 nt2 537 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
69 449 nt71 985 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
IG1_RS00445GCF_000293685#IG1_RS00445
RROmpRCurrent focus
69 449-70 138 nt · Forward (+)
IG1_RS00450GCF_000293685#IG1_RS00450
HKClassic
70 135-71 985 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000160935#BCERE0005_RS22780Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1246898
Simplified PFAM architecture for RROC_1246898
PFAM domain coverage: 181 / 229 aa (79.0%)
1 aa229 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[154-225]
- Domain count: 2
- Matched identifier: RROC_1246898
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 154-225 ; Trans_reg_C 154-225
Cluster members and taxonomy
Representative gene: GCF_000160935#BCERE0005_RS22780
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 053 200 · GCF_000293685
AssemblyBaci_cere_HD73_V1 · Scaffoldhaploid
Genome composition5 879 192 bp · 35,0% GCBacillus cereus HD73
Signal transduction countsGenes 100 · HK 54 · RR 46CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key