1 Response_reg#1
4-113 aa · 110 aa · 30.4% of protein
Raw token
Response_reg:4:5.91e-21:113:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IG1_RS01190
Response regulator SarP family
Bacillus cereus HD73 · GCF_000293685
ClassRRTypeSarPLength362 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000293685#IG1_RS01190Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_CBTAD
Protein length362 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage316 / 362 aa (87.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_C,1 BTADSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa362 aa
Domain-by-domain annotation3 items
2 Trans_reg_C#2
148-227 aa · 80 aa · 22.1% of protein
Raw token
Trans_reg_C:148:0.0000000477:227:82:773 BTAD#3
234-359 aa · 126 aa · 34.8% of protein
Raw token
BTAD:234:0.0000148:359:131:146- Raw architecture: Response_reg:4:5.91e-21:113:112:111#Trans_reg_C:148:0.0000000477:227:82:77#BTAD:234:0.0000148:359:131:146
- Domain description: 1 Response_reg,1 Trans_reg_C,1 BTAD
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000293685::NZ_JH804650.1::G00005
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span197559-198647Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIG1_00208RefSeq proteinWP_001201607.1
Context group ID
GCF_000293685::NZ_JH804650.1::G00005Context members
IG1_RS01190
Partner locus tags
IG1_RS01190
Partner old locus tags
IG1_00208
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_001201607.1Primary protein accession used for annex mappings.
UniProt accessionA0A9X6MSK7Primary UniProt accession resolved in the annex database.
UniProt IDA0A9X6MSK7_BACTVDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIG1_RS01190Primary locus identifier stored in the genes table.
Old locus tagIG1_00208Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH804650.1Sequence record reported by the local genomic context database.
Genomic interval197 559-198 647 nt1 089 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span197 559-198 647 ntGCF_000293685::NZ_JH804650.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000293685::NZ_JH804650.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH804650.1All displayed genes belong to this local TCS context.
Neighborhood span197 559-198 647 nt1 089 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
197 559 nt198 647 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
IG1_RS01190GCF_000293685#IG1_RS01190
RRSarPCurrent focus
197 559-198 647 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000161575#BTHUR0006_RS22315Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C + BTAD3 domains in the representative PFAM annotation.
PFAM architecture for RROC_0455143
Simplified PFAM architecture for RROC_0455143
PFAM domain coverage: 286 / 362 aa (79.0%)
1 aa362 aa
Response_regTrans_reg_CBTAD
- Simplified architecture: Response_reg + Trans_reg_C + BTAD
- Raw architecture: Response_reg[4-112] | Trans_reg_C[158-227] | BTAD[235-341]
- Domain count: 3
- Matched identifier: RROC_0455143
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 158-227 ; Trans_reg_C 158-227 ; BTAD 235-341 ; BTAD 235-341
Cluster members and taxonomy
Representative gene: GCF_000161575#BTHUR0006_RS22315
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 053 200 · GCF_000293685
AssemblyBaci_cere_HD73_V1 · Scaffoldhaploid
Genome composition5 879 192 bp · 35,0% GCBacillus cereus HD73
Signal transduction countsGenes 100 · HK 54 · RR 46CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key