1 Response_reg#1
4-116 aa · 113 aa · 56.5% of protein
Raw token
Response_reg:4:2.79e-26:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IEE_RS00725
Response regulator NarL family
Bacillus cereus BAG5X1-1 · GCF_000291295
ClassRRTypeNarLLength200 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000291295#IEE_RS00725Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length200 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage169 / 200 aa (84.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa200 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
139-194 aa · 56 aa · 28.0% of protein
Raw token
HTH_LUXR:139:1.75e-20:194:56:58- Raw architecture: Response_reg:4:2.79e-26:116:113:111#HTH_LUXR:139:1.75e-20:194:56:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000291295::NZ_JH791996.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span156967-158690Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIEE_00141RefSeq proteinWP_002198753.1
Context group ID
GCF_000291295::NZ_JH791996.1::G00005Context members
IEE_RS00720IEE_RS00725
Partner locus tags
IEE_RS00720IEE_RS00725
Partner old locus tags
IEE_00140IEE_00141
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002198753.1Primary protein accession used for annex mappings.
UniProt accessionA0A1E8BGS5Primary UniProt accession resolved in the annex database.
UniProt IDA0A1E8BGS5_BACMYDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIEE_RS00725Primary locus identifier stored in the genes table.
Old locus tagIEE_00141Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH791996.1Sequence record reported by the local genomic context database.
Genomic interval158 088-158 690 nt603 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span156 967-158 690 ntGCF_000291295::NZ_JH791996.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000291295::NZ_JH791996.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH791996.1All displayed genes belong to this local TCS context.
Neighborhood span156 967-158 690 nt1 724 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
156 967 nt158 690 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
IEE_RS00720GCF_000291295#IEE_RS00720
HKClassic
156 967-158 091 nt · Forward (+)
IEE_RS00725GCF_000291295#IEE_RS00725
RRNarLCurrent focus
158 088-158 690 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000291295#IEE_RS00725The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2134733
Simplified PFAM architecture for RROC_2134733
PFAM domain coverage: 169 / 200 aa (84.5%)
1 aa200 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[4-116] | GerE[139-194]
- Domain count: 2
- Matched identifier: RROC_2134733
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; GerE 139-194 ; GerE 139-194
Cluster members and taxonomy
Representative gene: GCF_000291295#IEE_RS00725
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 053 189 · GCF_000291295
AssemblyBaci_cere_BAG5X1-1_V1 · Scaffoldhaploid
Genome composition5 635 174 bp · 35,0% GCBacillus cereus BAG5X1-1
Signal transduction countsGenes 115 · HK 63 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key