1 Response_reg#1
6-113 aa · 108 aa · 48.4% of protein
Raw token
Response_reg:6:3.25e-42:113:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
II3_RS05045
Response regulator OmpR family
Bacillus cereus MC67 · GCF_000291155
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000291155#II3_RS05045Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 223 aa (81.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-221 aa · 74 aa · 33.2% of protein
Raw token
Trans_reg_C:148:4.43e-36:221:77:77- Raw architecture: Response_reg:6:3.25e-42:113:109:111#Trans_reg_C:148:4.43e-36:221:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000291155::NZ_JH792113.1::G00013
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1019356-1021431Genomic interval covered by the local TCS group.
Identifiers
Old locus tagII3_01046RefSeq proteinWP_002158760.1
Context group ID
GCF_000291155::NZ_JH792113.1::G00013Context members
II3_RS05040II3_RS05045
Partner locus tags
II3_RS05040II3_RS05045
Partner old locus tags
II3_01045II3_01046
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002158760.1Primary protein accession used for annex mappings.
UniProt accessionJ8CAC5Primary UniProt accession resolved in the annex database.
UniProt IDJ8CAC5_BACCEDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagII3_RS05045Primary locus identifier stored in the genes table.
Old locus tagII3_01046Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH792113.1Sequence record reported by the local genomic context database.
Genomic interval1 020 760-1 021 431 nt672 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 019 356-1 021 431 ntGCF_000291155::NZ_JH792113.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000291155::NZ_JH792113.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH792113.1All displayed genes belong to this local TCS context.
Neighborhood span1 019 356-1 021 431 nt2 076 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 019 356 nt1 021 431 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
II3_RS05040GCF_000291155#II3_RS05040
HKClassic
1 019 356-1 020 756 nt · Reverse (-)
II3_RS05045GCF_000291155#II3_RS05045
RROmpRCurrent focus
1 020 760-1 021 431 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000291155#II3_RS05045The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1588535
Simplified PFAM architecture for RROC_1588535
PFAM domain coverage: 183 / 223 aa (82.1%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-114] | Trans_reg_C[148-221]
- Domain count: 2
- Matched identifier: RROC_1588535
- Positioned domains: Response_reg 6-114 ; Response_reg 6-114 ; Trans_reg_C 148-221 ; Trans_reg_C 148-221
Cluster members and taxonomy
Representative gene: GCF_000291155#II3_RS05045
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 053 219 · GCF_000291155
AssemblyBaci_cere_MC67_V1 · Scaffoldhaploid
Genome composition5 909 232 bp · 35,5% GCBacillus cereus MC67
Signal transduction countsGenes 116 · HK 64 · RR 52CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key