1 HAMP#1
62-129 aa · 68 aa · 19.0% of protein
Raw token
HAMP:62:0.00000000621:129:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
II3_RS02335
Histidine kinase, Classic
Bacillus cereus MC67 · GCF_000291155
ClassHKTypeClassicLength357 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000291155#II3_RS02335Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length357 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage244 / 357 aa (68.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 HisKA#2
134-199 aa · 66 aa · 18.5% of protein
Raw token
HisKA:134:0.000000000000141:199:66:643 HATPase_c#3
243-352 aa · 110 aa · 30.8% of protein
Raw token
HATPase_c:243:1.76e-31:352:110:109- Raw architecture: HAMP:62:0.00000000621:129:68:69#HisKA:134:0.000000000000141:199:66:64#HATPase_c:243:1.76e-31:352:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000291155::NZ_JH792113.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span479154-480901Genomic interval covered by the local TCS group.
Identifiers
Old locus tagII3_00483RefSeq proteinWP_002158262.1
Context group ID
GCF_000291155::NZ_JH792113.1::G00003Context members
II3_RS02335II3_RS02340
Partner locus tags
II3_RS02335II3_RS02340
Partner old locus tags
II3_00483II3_00484
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002158262.1Primary protein accession used for annex mappings.
UniProt accessionJ8FR57Primary UniProt accession resolved in the annex database.
UniProt IDJ8FR57_BACCEDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagII3_RS02335Primary locus identifier stored in the genes table.
Old locus tagII3_00483Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH792113.1Sequence record reported by the local genomic context database.
Genomic interval479 154-480 227 nt1 074 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span479 154-480 901 ntGCF_000291155::NZ_JH792113.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000291155::NZ_JH792113.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH792113.1All displayed genes belong to this local TCS context.
Neighborhood span479 154-480 901 nt1 748 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
479 154 nt480 901 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
II3_RS02335GCF_000291155#II3_RS02335
HKClassicCurrent focus
479 154-480 227 nt · Reverse (-)
II3_RS02340GCF_000291155#II3_RS02340
RROmpR
480 224-480 901 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000291155#II3_RS02335The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2765164
Simplified PFAM architecture for HKOC_2765164
PFAM domain coverage: 175 / 357 aa (49.0%)
1 aa357 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[134-198] | HATPase_c[244-353]
- Domain count: 2
- Matched identifier: HKOC_2765164
- Positioned domains: HisKA 134-198 ; HATPase_c 244-353
Cluster members and taxonomy
Representative gene: GCF_000291155#II3_RS02335
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 053 219 · GCF_000291155
AssemblyBaci_cere_MC67_V1 · Scaffoldhaploid
Genome composition5 909 232 bp · 35,5% GCBacillus cereus MC67
Signal transduction countsGenes 116 · HK 64 · RR 52CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key