1 Hpt#1
4-96 aa · 93 aa · 14.1% of protein
Raw token
Hpt:4:6.34e-17:96:93:84P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IGO_RS07380
Histidine kinase, CheA
Bacillus toyonensis · GCF_000291115
ClassHKTypeCheALength661 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000291115#IGO_RS07380Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HptH-kinase_dimHATPase_cCheW
Protein length661 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage426 / 661 aa (64.4%)Merged over positioned domains only.
Domain description1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheWSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa661 aa
Domain-by-domain annotation4 items
2 H-kinase_dim#2
278-337 aa · 60 aa · 9.1% of protein
Raw token
H-kinase_dim:278:0.00000000741:337:67:673 HATPase_c#3
385-524 aa · 140 aa · 21.2% of protein
Raw token
HATPase_c:385:2.22e-17:524:140:1094 CheW#4
529-661 aa · 133 aa · 20.1% of protein
Raw token
CheW:529:1.65e-21:661:139:138- Raw architecture: Hpt:4:6.34e-17:96:93:84#H-kinase_dim:278:0.00000000741:337:67:67#HATPase_c:385:2.22e-17:524:140:109#CheW:529:1.65e-21:661:139:138
- Domain description: 1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheW
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000291115::NZ_JH792120.1::G00023
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1507960-1510443Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIGO_01435RefSeq proteinWP_001192587.1
Context group ID
GCF_000291115::NZ_JH792120.1::G00023Context members
IGO_RS07375IGO_RS07380
Partner locus tags
IGO_RS07375IGO_RS07380
Partner old locus tags
IGO_01434IGO_01435
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_001192587.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIGO_RS07380Primary locus identifier stored in the genes table.
Old locus tagIGO_01435Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH792120.1Sequence record reported by the local genomic context database.
Genomic interval1 508 458-1 510 443 nt1 986 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 507 960-1 510 443 ntGCF_000291115::NZ_JH792120.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000291115::NZ_JH792120.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH792120.1All displayed genes belong to this local TCS context.
Neighborhood span1 507 960-1 510 443 nt2 484 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 507 960 nt1 510 443 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
IGO_RS07375GCF_000291115#IGO_RS07375
RRCheY
1 507 960-1 508 328 nt · Forward (+)
IGO_RS07380GCF_000291115#IGO_RS07380
HKCheACurrent focus
1 508 458-1 510 443 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000291115#IGO_RS07380The current gene is the representative for this cluster.
PFAM architectureHpt + P2 + H-kinase_dim + HATPase_c + CheW5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0869866
Simplified PFAM architecture for HKOC_0869866
PFAM domain coverage: 509 / 661 aa (77.0%)
1 aa661 aa
HptP2H-kinase_dimHATPase_cCheW
- Simplified architecture: Hpt + P2 + H-kinase_dim + HATPase_c + CheW
- Raw architecture: Hpt[4-103] | P2[148-225] | H-kinase_dim[278-336] | HATPase_c[385-524] | CheW[530-661]
- Domain count: 5
- Matched identifier: HKOC_0869866
- Positioned domains: Hpt 4-103 ; P2 148-225 ; H-kinase_dim 278-336 ; HATPase_c 385-524 ; CheW 530-661
Cluster members and taxonomy
Representative gene: GCF_000291115#IGO_RS07380
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 155 322 · GCF_000291115
AssemblyBaci_cere_HuB5-5_V1 · Scaffoldhaploid
Genome composition5 802 972 bp · 35,0% GCBacillus toyonensis
Signal transduction countsGenes 119 · HK 64 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key