1 GAF#1
23-163 aa · 141 aa · 21.0% of protein
Raw token
GAF:23:0.00000000000000182:163:143:133P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IGO_RS01280
Histidine kinase, Classic
Bacillus toyonensis · GCF_000291115
ClassHKTypeClassicLength671 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000291115#IGO_RS01280Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
GAFPAS_4HisKAHATPase_c
Protein length671 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage398 / 671 aa (59.3%)Merged over positioned domains only.
Domain description1 GAF,1 PAS_4,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa671 aa
Domain-by-domain annotation4 items
2 PAS_4#2
344-444 aa · 101 aa · 15.1% of protein
Raw token
PAS_4:344:0.000000086:444:113:1103 HisKA#3
459-516 aa · 58 aa · 8.6% of protein
Raw token
HisKA:459:0.0000000000000271:516:58:644 HATPase_c#4
568-665 aa · 98 aa · 14.6% of protein
Raw token
HATPase_c:568:5.15e-19:665:103:109- Raw architecture: GAF:23:0.00000000000000182:163:143:133#PAS_4:344:0.000000086:444:113:110#HisKA:459:0.0000000000000271:516:58:64#HATPase_c:568:5.15e-19:665:103:109
- Domain description: 1 GAF,1 PAS_4,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000291115::NZ_JH792120.1::G00003
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span279473-281488Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIGO_00235RefSeq proteinWP_000947553.1
Context group ID
GCF_000291115::NZ_JH792120.1::G00003Context members
IGO_RS01280
Partner locus tags
IGO_RS01280
Partner old locus tags
IGO_00235
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000947553.1Primary protein accession used for annex mappings.
UniProt accessionA0ABX6G4E5Primary UniProt accession resolved in the annex database.
UniProt IDA0ABX6G4E5_9BACIDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIGO_RS01280Primary locus identifier stored in the genes table.
Old locus tagIGO_00235Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH792120.1Sequence record reported by the local genomic context database.
Genomic interval279 473-281 488 nt2 016 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span279 473-281 488 ntGCF_000291115::NZ_JH792120.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000291115::NZ_JH792120.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH792120.1All displayed genes belong to this local TCS context.
Neighborhood span279 473-281 488 nt2 016 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
279 473 nt281 488 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
IGO_RS01280GCF_000291115#IGO_RS01280
HKClassicCurrent focus
279 473-281 488 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000290815#IK3_RS25310Use this link to inspect the representative gene detail.
PFAM architectureGAF + PAS_4 + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0842532
Simplified PFAM architecture for HKOC_0842532
PFAM domain coverage: 399 / 671 aa (59.5%)
1 aa671 aa
GAFPAS_4HisKAHATPase_c
- Simplified architecture: GAF + PAS_4 + HisKA + HATPase_c
- Raw architecture: GAF[24-163] | PAS_4[344-443] | HisKA[459-516] | HATPase_c[565-665]
- Domain count: 4
- Matched identifier: HKOC_0842532
- Positioned domains: GAF 24-163 ; PAS_4 344-443 ; HisKA 459-516 ; HATPase_c 565-665
Cluster members and taxonomy
Representative gene: GCF_000290815#IK3_RS25310
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 155 322 · GCF_000291115
AssemblyBaci_cere_HuB5-5_V1 · Scaffoldhaploid
Genome composition5 802 972 bp · 35,0% GCBacillus toyonensis
Signal transduction countsGenes 119 · HK 64 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key