1 Response_reg#1
6-115 aa · 110 aa · 46.4% of protein
Raw token
Response_reg:6:2.65e-36:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IGO_RS01040
Response regulator OmpR family
Bacillus toyonensis · GCF_000291115
ClassRRTypeOmpRLength237 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000291115#IGO_RS01040Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length237 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 237 aa (78.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa237 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
155-230 aa · 76 aa · 32.1% of protein
Raw token
Trans_reg_C:155:2.85e-34:230:76:77- Raw architecture: Response_reg:6:2.65e-36:115:111:111#Trans_reg_C:155:2.85e-34:230:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000291115::NZ_JH792120.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span220019-221735Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIGO_00188RefSeq proteinWP_000651987.1
Context group ID
GCF_000291115::NZ_JH792120.1::G00002Context members
IGO_RS01035IGO_RS01040
Partner locus tags
IGO_RS01035IGO_RS01040
Partner old locus tags
IGO_00187IGO_00188
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_000651987.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIGO_RS01040Primary locus identifier stored in the genes table.
Old locus tagIGO_00188Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH792120.1Sequence record reported by the local genomic context database.
Genomic interval221 022-221 735 nt714 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span220 019-221 735 ntGCF_000291115::NZ_JH792120.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000291115::NZ_JH792120.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH792120.1All displayed genes belong to this local TCS context.
Neighborhood span220 019-221 735 nt1 717 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
220 019 nt221 735 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
IGO_RS01035GCF_000291115#IGO_RS01035
HKClassic
220 019-221 032 nt · Reverse (-)
IGO_RS01040GCF_000291115#IGO_RS01040
RROmpRCurrent focus
221 022-221 735 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000291115#IGO_RS01040The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0962221
Simplified PFAM architecture for RROC_0962221
PFAM domain coverage: 186 / 237 aa (78.5%)
1 aa237 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-115] | Trans_reg_C[155-230]
- Domain count: 2
- Matched identifier: RROC_0962221
- Positioned domains: Response_reg 6-115 ; Response_reg 6-115 ; Trans_reg_C 155-230 ; Trans_reg_C 155-230
Cluster members and taxonomy
Representative gene: GCF_000291115#IGO_RS01040
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 155 322 · GCF_000291115
AssemblyBaci_cere_HuB5-5_V1 · Scaffoldhaploid
Genome composition5 802 972 bp · 35,0% GCBacillus toyonensis
Signal transduction countsGenes 119 · HK 64 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key