1 HisKA#1
193-248 aa · 56 aa · 13.7% of protein
Raw token
HisKA:193:0.000000000317:248:57:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IIG_RS00670
Histidine kinase, Classic
Bacillus cereus VD048 · GCF_000290915
ClassHKTypeClassicLength409 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000290915#IIG_RS00670Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length409 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage162 / 409 aa (39.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
296-401 aa · 106 aa · 25.9% of protein
Raw token
HATPase_c:296:7.85e-18:401:109:109- Raw architecture: HisKA:193:0.000000000317:248:57:64#HATPase_c:296:7.85e-18:401:109:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000290915::NZ_JH792310.1::G00005
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span110516-111745Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIIG_00109RefSeq proteinWP_002015715.1
Context group ID
GCF_000290915::NZ_JH792310.1::G00005Context members
IIG_RS00670
Partner locus tags
IIG_RS00670
Partner old locus tags
IIG_00109
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002015715.1Primary protein accession used for annex mappings.
UniProt accessionJ8IQT4Primary UniProt accession resolved in the annex database.
UniProt IDJ8IQT4_BACCEDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIIG_RS00670Primary locus identifier stored in the genes table.
Old locus tagIIG_00109Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH792310.1Sequence record reported by the local genomic context database.
Genomic interval110 516-111 745 nt1 230 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span110 516-111 745 ntGCF_000290915::NZ_JH792310.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000290915::NZ_JH792310.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH792310.1All displayed genes belong to this local TCS context.
Neighborhood span110 516-111 745 nt1 230 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
110 516 nt111 745 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
IIG_RS00670GCF_000290915#IIG_RS00670
HKClassicCurrent focus
110 516-111 745 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000160975#BCERE0007_RS22075Use this link to inspect the representative gene detail.
PFAM architectureMASE12 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2362770
Simplified PFAM architecture for HKOC_2362770
PFAM domain coverage: 318 / 409 aa (77.8%)
1 aa409 aa
MASE12HisKAHATPase_c
- Simplified architecture: MASE12 + HisKA + HATPase_c
- Raw architecture: MASE12[10-166] | HisKA[193-248] | HATPase_c[296-400]
- Domain count: 3
- Matched identifier: HKOC_2362770
- Positioned domains: MASE12 10-166 ; HisKA 193-248 ; HATPase_c 296-400
Cluster members and taxonomy
Representative gene: GCF_000160975#BCERE0007_RS22075
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 053 226 · GCF_000290915
AssemblyBaci_cere_VD048_V1 · Scaffoldhaploid
Genome composition6 038 572 bp · 35,0% GCBacillus cereus VD048
Signal transduction countsGenes 133 · HK 71 · RR 62CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key