1 HisKA#1
116-169 aa · 54 aa · 15.9% of protein
Raw token
HisKA:116:0.00000537:169:59:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IIG_RS00310
Histidine kinase, Classic
Bacillus cereus VD048 · GCF_000290915
ClassHKTypeClassicLength340 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000290915#IIG_RS00310Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length340 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage162 / 340 aa (47.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
216-323 aa · 108 aa · 31.8% of protein
Raw token
HATPase_c:216:3.25e-27:323:108:109- Raw architecture: HisKA:116:0.00000537:169:59:64#HATPase_c:216:3.25e-27:323:108:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000290915::NZ_JH792310.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span50272-51992Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIIG_00040RefSeq proteinWP_002015836.1
Context group ID
GCF_000290915::NZ_JH792310.1::G00002Context members
IIG_RS00310IIG_RS00315
Partner locus tags
IIG_RS00310IIG_RS00315
Partner old locus tags
IIG_00040IIG_00041
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002015836.1Primary protein accession used for annex mappings.
UniProt accessionA0A243AJJ5Primary UniProt accession resolved in the annex database.
UniProt IDA0A243AJJ5_BACTUDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIIG_RS00310Primary locus identifier stored in the genes table.
Old locus tagIIG_00040Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JH792310.1Sequence record reported by the local genomic context database.
Genomic interval50 272-51 294 nt1 023 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span50 272-51 992 ntGCF_000290915::NZ_JH792310.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000290915::NZ_JH792310.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JH792310.1All displayed genes belong to this local TCS context.
Neighborhood span50 272-51 992 nt1 721 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
50 272 nt51 992 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
IIG_RS00310GCF_000290915#IIG_RS00310
HKClassicCurrent focus
50 272-51 294 nt · Reverse (-)
IIG_RS00315GCF_000290915#IIG_RS00315
RROmpR
51 297-51 992 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000160975#BCERE0007_RS22625Use this link to inspect the representative gene detail.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2836487
Simplified PFAM architecture for HKOC_2836487
PFAM domain coverage: 108 / 340 aa (31.8%)
1 aa340 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[216-323]
- Domain count: 1
- Matched identifier: HKOC_2836487
- Positioned domains: HATPase_c 216-323
Cluster members and taxonomy
Representative gene: GCF_000160975#BCERE0007_RS22625
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 053 226 · GCF_000290915
AssemblyBaci_cere_VD048_V1 · Scaffoldhaploid
Genome composition6 038 572 bp · 35,0% GCBacillus cereus VD048
Signal transduction countsGenes 133 · HK 71 · RR 62CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key