1 HisKA#1
193-248 aa · 56 aa · 13.7% of protein
Raw token
HisKA:193:0.000000000317:248:57:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BCERE0007_RS22075
Histidine kinase, Classic
Bacillus mycoides · GCF_000160975
ClassHKTypeClassicLength409 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000160975#BCERE0007_RS22075Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length409 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage162 / 409 aa (39.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
296-401 aa · 106 aa · 25.9% of protein
Raw token
HATPase_c:296:7.85e-18:401:109:109- Raw architecture: HisKA:193:0.000000000317:248:57:64#HATPase_c:296:7.85e-18:401:109:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000160975::NZ_CM000719.1::G00053
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span4330389-4331618Genomic interval covered by the local TCS group.
Identifiers
Old locus tagbcere0007_44580RefSeq proteinWP_002015715.1
Context group ID
GCF_000160975::NZ_CM000719.1::G00053Context members
BCERE0007_RS22075
Partner locus tags
BCERE0007_RS22075
Partner old locus tags
bcere0007_44580
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002015715.1Primary protein accession used for annex mappings.
UniProt accessionJ8IQT4Primary UniProt accession resolved in the annex database.
UniProt IDJ8IQT4_BACCEDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBCERE0007_RS22075Primary locus identifier stored in the genes table.
Old locus tagbcere0007_44580Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CM000719.1Sequence record reported by the local genomic context database.
Genomic interval4 330 389-4 331 618 nt1 230 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span4 330 389-4 331 618 ntGCF_000160975::NZ_CM000719.1::G00053
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000160975::NZ_CM000719.1::G00053Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CM000719.1All displayed genes belong to this local TCS context.
Neighborhood span4 330 389-4 331 618 nt1 230 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 330 389 nt4 331 618 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BCERE0007_RS22075GCF_000160975#BCERE0007_RS22075
HKClassicCurrent focus
4 330 389-4 331 618 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000160975#BCERE0007_RS22075The current gene is the representative for this cluster.
PFAM architectureMASE12 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2362770
Simplified PFAM architecture for HKOC_2362770
PFAM domain coverage: 318 / 409 aa (77.8%)
1 aa409 aa
MASE12HisKAHATPase_c
- Simplified architecture: MASE12 + HisKA + HATPase_c
- Raw architecture: MASE12[10-166] | HisKA[193-248] | HATPase_c[296-400]
- Domain count: 3
- Matched identifier: HKOC_2362770
- Positioned domains: MASE12 10-166 ; HisKA 193-248 ; HATPase_c 296-400
Cluster members and taxonomy
Representative gene: GCF_000160975#BCERE0007_RS22075
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_000160975
AssemblyASM16097v1 · Chromosomehaploid
Genome composition5 674 808 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 131 · HK 70 · RR 61CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key