1 Response_reg#1
3-113 aa · 111 aa · 48.7% of protein
Raw token
Response_reg:3:1.29e-25:113:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
A267_RS0117070
Response regulator OmpR family
Yersinia pestis 2501 · GCF_000275685
ClassRRTypeOmpRLength228 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000275685#A267_RS0117070Stable P2CS identifier used across views.
GenomeGCF_000275685Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Yersiniaceae; Yersinia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length228 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 228 aa (82.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa228 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
151-227 aa · 77 aa · 33.8% of protein
Raw token
Trans_reg_C:151:5.95e-26:227:77:77- Raw architecture: Response_reg:3:1.29e-25:113:112:111#Trans_reg_C:151:5.95e-26:227:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000275685::NZ_AKVQ01000125.1::G00031
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span172-2233Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000275685::NZ_AKVQ01000125.1::G00031Context members
A267_RS0117065A267_RS0117070
Partner locus tags
A267_RS0117065A267_RS0117070
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_016257859.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagA267_RS0117070Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_AKVQ01000125.1Sequence record reported by the local genomic context database.
Genomic interval1 547-2 233 nt687 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span172-2 233 ntGCF_000275685::NZ_AKVQ01000125.1::G00031
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000275685::NZ_AKVQ01000125.1::G00031Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AKVQ01000125.1All displayed genes belong to this local TCS context.
Neighborhood span172-2 233 nt2 062 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
172 nt2 233 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
A267_RS0117065GCF_000275685#A267_RS0117065
HKClassic
172-1 521 nt · Reverse (-)
A267_RS0117070GCF_000275685#A267_RS0117070
RROmpRCurrent focus
1 547-2 233 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000275685#A267_RS0117070The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1303196
Simplified PFAM architecture for RROC_1303196
PFAM domain coverage: 187 / 228 aa (82.0%)
1 aa228 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-112] | Trans_reg_C[151-227]
- Domain count: 2
- Matched identifier: RROC_1303196
- Positioned domains: Response_reg 3-112 ; Response_reg 3-112 ; Trans_reg_C 151-227 ; Trans_reg_C 151-227
Cluster members and taxonomy
Representative gene: GCF_000275685#A267_RS0117070
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 194 970 · GCF_000275685
AssemblyASM27568v1 · Scaffoldhaploid
Genome composition4 597 322 bp · 47,5% GCYersinia pestis 2501
Signal transduction countsGenes 50 · HK 23 · RR 27CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyYersiniaceaeGenusYersinia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Yersiniaceae7Yersinia
Related genes
Preview from the same derived genome key