1 HAMP#1
181-246 aa · 66 aa · 7.1% of protein
Raw token
HAMP:181:0.0000000000864:246:66:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
A267_RS0102300
Histidine kinase, Unorthodox
Yersinia pestis 2501 · GCF_000275685
ClassHKTypeUnorthodoxLength936 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000275685#A267_RS0102300Stable P2CS identifier used across views.
GenomeGCF_000275685Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Yersiniaceae; Yersinia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_cResponse_regHpt
Protein length936 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage443 / 936 aa (47.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_c,1 Response_reg,1 HptSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa936 aa
Domain-by-domain annotation5 items
2 HisKA#2
292-355 aa · 64 aa · 6.8% of protein
Raw token
HisKA:292:9.61e-17:355:64:643 HATPase_c#3
403-518 aa · 116 aa · 12.4% of protein
Raw token
HATPase_c:403:6.95e-29:518:116:1094 Response_reg#4
670-781 aa · 112 aa · 12.0% of protein
Raw token
Response_reg:670:1.08e-29:781:112:1115 Hpt#5
844-928 aa · 85 aa · 9.1% of protein
Raw token
Hpt:844:0.00000000000109:928:85:84- Raw architecture: HAMP:181:0.0000000000864:246:66:69#HisKA:292:9.61e-17:355:64:64#HATPase_c:403:6.95e-29:518:116:109#Response_reg:670:1.08e-29:781:112:111#Hpt:844:0.00000000000109:928:85:84
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c,1 Response_reg,1 Hpt
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000275685::NZ_AKVQ01000005.1::G00003
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span56660-59470Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000275685::NZ_AKVQ01000005.1::G00003Context members
A267_RS0102300
Partner locus tags
A267_RS0102300
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_002223197.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagA267_RS0102300Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_AKVQ01000005.1Sequence record reported by the local genomic context database.
Genomic interval56 660-59 470 nt2 811 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span56 660-59 470 ntGCF_000275685::NZ_AKVQ01000005.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000275685::NZ_AKVQ01000005.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AKVQ01000005.1All displayed genes belong to this local TCS context.
Neighborhood span56 660-59 470 nt2 811 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
56 660 nt59 470 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
A267_RS0102300GCF_000275685#A267_RS0102300
HKUnorthodoxCurrent focus
56 660-59 470 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000169655#YPK1973002_RS25710Use this link to inspect the representative gene detail.
PFAM architecturesCache_4 + HAMP + HisKA + HATPase_c + Response_reg + Hpt6 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0344326
Simplified PFAM architecture for HKOC_0344326
PFAM domain coverage: 573 / 936 aa (61.2%)
1 aa936 aa
sCache_4HAMPHisKAHATPase_cResponse_regHpt
- Simplified architecture: sCache_4 + HAMP + HisKA + HATPase_c + Response_reg + Hpt
- Raw architecture: sCache_4[31-176] | HAMP[197-247] | HisKA[292-355] | HATPase_c[403-518] | Response_reg[670-781] | Hpt[844-927]
- Domain count: 6
- Matched identifier: HKOC_0344326
- Positioned domains: sCache_4 31-176 ; HAMP 197-247 ; HisKA 292-355 ; HATPase_c 403-518 ; Response_reg 670-781 ; Hpt 844-927
Cluster members and taxonomy
Representative gene: GCF_000169655#YPK1973002_RS25710
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 194 970 · GCF_000275685
AssemblyASM27568v1 · Scaffoldhaploid
Genome composition4 597 322 bp · 47,5% GCYersinia pestis 2501
Signal transduction countsGenes 50 · HK 23 · RR 27CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyYersiniaceaeGenusYersinia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Yersiniaceae7Yersinia
Related genes
Preview from the same derived genome key