1 Response_reg#1
4-113 aa · 110 aa · 47.8% of protein
Raw token
Response_reg:4:7.65e-32:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SGPB_RS07495
Response regulator OmpR family
Streptococcus pasteurianus ATCC 43144 · GCF_000270165
ClassRRTypeOmpRLength230 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000270165#SGPB_RS07495Stable P2CS identifier used across views.
GenomeGCF_000270165Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length230 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 230 aa (80.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa230 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
151-226 aa · 76 aa · 33.0% of protein
Raw token
Trans_reg_C:151:8.67e-26:226:77:77- Raw architecture: Response_reg:4:7.65e-32:113:111:111#Trans_reg_C:151:8.67e-26:226:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000270165::NC_015600.1::G00011
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1517197-1519366Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSGPB_1459RefSeq proteinWP_013852116.1
Context group ID
GCF_000270165::NC_015600.1::G00011Context members
SGPB_RS07490SGPB_RS07495
Partner locus tags
SGPB_RS07490SGPB_RS07495
Partner old locus tags
SGPB_1458SGPB_1459
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_013852116.1Primary protein accession used for annex mappings.
UniProt accessionA0A2I1YFL9Primary UniProt accession resolved in the annex database.
UniProt IDA0A2I1YFL9_STRMCDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSGPB_RS07495Primary locus identifier stored in the genes table.
Old locus tagSGPB_1459Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_015600.1Sequence record reported by the local genomic context database.
Genomic interval1 518 674-1 519 366 nt693 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 517 197-1 519 366 ntGCF_000270165::NC_015600.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000270165::NC_015600.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_015600.1All displayed genes belong to this local TCS context.
Neighborhood span1 517 197-1 519 366 nt2 170 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 517 197 nt1 519 366 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
SGPB_RS07490GCF_000270165#SGPB_RS07490
HKClassic
1 517 197-1 518 702 nt · Reverse (-)
SGPB_RS07495GCF_000270165#SGPB_RS07495
RROmpRCurrent focus
1 518 674-1 519 366 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000270165#SGPB_RS07495The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1201043
Simplified PFAM architecture for RROC_1201043
PFAM domain coverage: 184 / 230 aa (80.0%)
1 aa230 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[152-226]
- Domain count: 2
- Matched identifier: RROC_1201043
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 152-226 ; Trans_reg_C 152-226
Cluster members and taxonomy
Representative gene: GCF_000270165#SGPB_RS07495
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 981 540 · GCF_000270165
AssemblyASM27016v1 · Complete Genomehaploid
Genome composition2 100 077 bp · 37,5% GCStreptococcus pasteurianus ATCC 43144
Signal transduction countsGenes 25 · HK 12 · RR 12CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyStreptococcaceaeGenusStreptococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Streptococcaceae7Streptococcus
Related genes
Preview from the same derived genome key