1 HisKA_3#1
242-309 aa · 68 aa · 15.5% of protein
Raw token
HisKA_3:242:5.24e-22:309:68:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SGPB_RS00715
Histidine kinase, Classic
Streptococcus pasteurianus ATCC 43144 · GCF_000270165
ClassHKTypeClassicLength438 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000270165#SGPB_RS00715Stable P2CS identifier used across views.
GenomeGCF_000270165Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length438 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage152 / 438 aa (34.7%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa438 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
347-430 aa · 84 aa · 19.2% of protein
Raw token
HATPase_c:347:0.000000000344:430:103:109- Raw architecture: HisKA_3:242:5.24e-22:309:68:68#HATPase_c:347:0.000000000344:430:103:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000270165::NC_015600.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span108853-110858Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSGPB_0108RefSeq proteinWP_370695861.1
Context group ID
GCF_000270165::NC_015600.1::G00001Context members
SGPB_RS00715SGPB_RS00720
Partner locus tags
SGPB_RS00715SGPB_RS00720
Partner old locus tags
SGPB_0108SGPB_0109
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_370695861.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSGPB_RS00715Primary locus identifier stored in the genes table.
Old locus tagSGPB_0108Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_015600.1Sequence record reported by the local genomic context database.
Genomic interval108 853-110 178 nt1 326 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span108 853-110 858 ntGCF_000270165::NC_015600.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000270165::NC_015600.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_015600.1All displayed genes belong to this local TCS context.
Neighborhood span108 853-110 858 nt2 006 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
108 853 nt110 858 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
SGPB_RS00715GCF_000270165#SGPB_RS00715
HKClassicCurrent focus
108 853-110 178 nt · Forward (+)
SGPB_RS00720GCF_000270165#SGPB_RS00720
RRNarL
110 175-110 858 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000826225#TY73_RS08915Use this link to inspect the representative gene detail.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2062176
Simplified PFAM architecture for HKOC_2062176
PFAM domain coverage: 152 / 441 aa (34.5%)
1 aa441 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[245-312] | HATPase_c[351-434]
- Domain count: 2
- Matched identifier: HKOC_2062176
- Positioned domains: HisKA_3 245-312 ; HATPase_c 351-434
Cluster members and taxonomy
Representative gene: GCF_000826225#TY73_RS08915
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 981 540 · GCF_000270165
AssemblyASM27016v1 · Complete Genomehaploid
Genome composition2 100 077 bp · 37,5% GCStreptococcus pasteurianus ATCC 43144
Signal transduction countsGenes 25 · HK 12 · RR 12CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyStreptococcaceaeGenusStreptococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Streptococcaceae7Streptococcus
Related genes
Preview from the same derived genome key