1 Response_reg#1
5-117 aa · 113 aa · 47.5% of protein
Raw token
Response_reg:5:5e-32:117:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EFME4453_RS08200
Response regulator, unclassified
Enterococcus faecium E4453 · GCF_000239095
ClassRRTypeunclassifiedLength238 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000239095#EFME4453_RS08200Stable P2CS identifier used across views.
GenomeGCF_000239095Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length238 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage113 / 238 aa (47.5%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa238 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:5:5e-32:117:113:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000239095::NZ_AEDZ01000230.1::G00010
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span7680-8396Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEfmE4453_2410RefSeq proteinWP_002321172.1
Context group ID
GCF_000239095::NZ_AEDZ01000230.1::G00010Context members
EFME4453_RS08200
Partner locus tags
EFME4453_RS08200
Partner old locus tags
EfmE4453_2410
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002321172.1Primary protein accession used for annex mappings.
UniProt accessionI3U1B8Primary UniProt accession resolved in the annex database.
UniProt IDI3U1B8_ENTFDDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEFME4453_RS08200Primary locus identifier stored in the genes table.
Old locus tagEfmE4453_2410Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AEDZ01000230.1Sequence record reported by the local genomic context database.
Genomic interval7 680-8 396 nt717 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span7 680-8 396 ntGCF_000239095::NZ_AEDZ01000230.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000239095::NZ_AEDZ01000230.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AEDZ01000230.1All displayed genes belong to this local TCS context.
Neighborhood span7 680-8 396 nt717 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
7 680 nt8 396 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
EFME4453_RS08200GCF_000239095#EFME4453_RS08200
RRunclassifiedCurrent focus
7 680-8 396 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_023956545#NG853_RS01040Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_0763256
Simplified PFAM architecture for RROC_0763256
PFAM domain coverage: 112 / 247 aa (45.3%)
1 aa247 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[5-116]
- Domain count: 1
- Matched identifier: RROC_0763256
- Positioned domains: Response_reg 5-116
Cluster members and taxonomy
Representative gene: GCF_023956545#NG853_RS01040
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 873 127 · GCF_000239095
AssemblyASM23909v2 · Contighaploid
Genome composition2 819 308 bp · 38,0% GCEnterococcus faecium E4453
Signal transduction countsGenes 36 · HK 17 · RR 19CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key