1 HisKA#1
203-268 aa · 66 aa · 11.4% of protein
Raw token
HisKA:203:5.61e-20:268:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CCU_RS08390
Histidine kinase, Hybrid
Coprococcus sp. ART55/1 · GCF_000210595
ClassHKTypeHybridLength581 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000210595#CCU_RS08390Stable P2CS identifier used across views.
GenomeGCF_000210595Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length581 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage298 / 581 aa (51.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa581 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
315-430 aa · 116 aa · 20.0% of protein
Raw token
HATPase_c:315:1.43e-30:430:116:1093 Response_reg#3
461-576 aa · 116 aa · 20.0% of protein
Raw token
Response_reg:461:3.89e-23:576:116:111- Raw architecture: HisKA:203:5.61e-20:268:66:64#HATPase_c:315:1.43e-30:430:116:109#Response_reg:461:3.89e-23:576:116:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000210595::NC_021018.1::G00027
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span1829223-1830968Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCCU_17730RefSeq proteinWP_015534296.1
Context group ID
GCF_000210595::NC_021018.1::G00027Context members
CCU_RS08390
Partner locus tags
CCU_RS08390
Partner old locus tags
CCU_17730
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_015534296.1Primary protein accession used for annex mappings.
UniProt accessionA0AAI9K2N6Primary UniProt accession resolved in the annex database.
UniProt IDA0AAI9K2N6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCCU_RS08390Primary locus identifier stored in the genes table.
Old locus tagCCU_17730Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_021018.1Sequence record reported by the local genomic context database.
Genomic interval1 829 223-1 830 968 nt1 746 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 829 223-1 830 968 ntGCF_000210595::NC_021018.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000210595::NC_021018.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_021018.1All displayed genes belong to this local TCS context.
Neighborhood span1 829 223-1 830 968 nt1 746 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 829 223 nt1 830 968 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CCU_RS08390GCF_000210595#CCU_RS08390
HKHybridCurrent focus
1 829 223-1 830 968 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210595#CCU_RS08390The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1156654
Simplified PFAM architecture for HKOC_1156654
PFAM domain coverage: 297 / 581 aa (51.1%)
1 aa581 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[203-268] | HATPase_c[315-430] | Response_reg[461-575]
- Domain count: 3
- Matched identifier: HKOC_1156654
- Positioned domains: HisKA 203-268 ; HATPase_c 315-430 ; Response_reg 461-575
Cluster members and taxonomy
Representative gene: GCF_000210595#CCU_RS08390
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 751 585 · GCF_000210595
AssemblyASM21059v1 · Chromosomehaploid
Genome composition3 123 007 bp · 44,5% GCCoprococcus sp. ART55/1
Signal transduction countsGenes 69 · HK 34 · RR 33CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key