1 sCache_like#1
64-167 aa · 104 aa · 21.2% of protein
Raw token
sCache_like:64:0.0000225:167:110:114P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CCU_RS00760
Histidine kinase, Classic
Coprococcus sp. ART55/1 · GCF_000210595
ClassHKTypeClassicLength491 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000210595#CCU_RS00760Stable P2CS identifier used across views.
GenomeGCF_000210595Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
sCache_likeHisKAHATPase_c
Protein length491 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage283 / 491 aa (57.6%)Merged over positioned domains only.
Domain description1 sCache_like,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa491 aa
Domain-by-domain annotation3 items
2 HisKA#2
265-332 aa · 68 aa · 13.8% of protein
Raw token
HisKA:265:0.0000000000000401:332:68:643 HATPase_c#3
378-488 aa · 111 aa · 22.6% of protein
Raw token
HATPase_c:378:8.58e-31:488:111:109- Raw architecture: sCache_like:64:0.0000225:167:110:114#HisKA:265:0.0000000000000401:332:68:64#HATPase_c:378:8.58e-31:488:111:109
- Domain description: 1 sCache_like,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000210595::NC_021018.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span164626-166789Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCCU_01660RefSeq proteinWP_015533196.1
Context group ID
GCF_000210595::NC_021018.1::G00003Context members
CCU_RS00760CCU_RS00765
Partner locus tags
CCU_RS00760CCU_RS00765
Partner old locus tags
CCU_01660CCU_01670
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_015533196.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCCU_RS00760Primary locus identifier stored in the genes table.
Old locus tagCCU_01660Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_021018.1Sequence record reported by the local genomic context database.
Genomic interval164 626-166 101 nt1 476 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span164 626-166 789 ntGCF_000210595::NC_021018.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000210595::NC_021018.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_021018.1All displayed genes belong to this local TCS context.
Neighborhood span164 626-166 789 nt2 164 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
164 626 nt166 789 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CCU_RS00760GCF_000210595#CCU_RS00760
HKClassicCurrent focus
164 626-166 101 nt · Reverse (-)
CCU_RS00765GCF_000210595#CCU_RS00765
RROmpR
166 103-166 789 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210595#CCU_RS00760The current gene is the representative for this cluster.
PFAM architecturesCache_like + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1527135
Simplified PFAM architecture for HKOC_1527135
PFAM domain coverage: 283 / 491 aa (57.6%)
1 aa491 aa
sCache_likeHisKAHATPase_c
- Simplified architecture: sCache_like + HisKA + HATPase_c
- Raw architecture: sCache_like[65-169] | HisKA[265-331] | HATPase_c[378-488]
- Domain count: 3
- Matched identifier: HKOC_1527135
- Positioned domains: sCache_like 65-169 ; HisKA 265-331 ; HATPase_c 378-488
Cluster members and taxonomy
Representative gene: GCF_000210595#CCU_RS00760
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 751 585 · GCF_000210595
AssemblyASM21059v1 · Chromosomehaploid
Genome composition3 123 007 bp · 44,5% GCCoprococcus sp. ART55/1
Signal transduction countsGenes 69 · HK 34 · RR 33CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key