1 Response_reg#1
25-136 aa · 112 aa · 77.2% of protein
Raw token
Response_reg:25:1.64e-28:136:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CCU_RS00555
Response regulator, CheY family
Coprococcus sp. ART55/1 · GCF_000210595
ClassRRTypeCheYLength145 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000210595#CCU_RS00555Stable P2CS identifier used across views.
GenomeGCF_000210595Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length145 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage112 / 145 aa (77.2%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa145 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:25:1.64e-28:136:112:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000210595::NC_021018.1::G00001
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span120181-120618Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCCU_01240RefSeq proteinWP_015533173.1
Context group ID
GCF_000210595::NC_021018.1::G00001Context members
CCU_RS00555
Partner locus tags
CCU_RS00555
Partner old locus tags
CCU_01240
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_015533173.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCCU_RS00555Primary locus identifier stored in the genes table.
Old locus tagCCU_01240Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_021018.1Sequence record reported by the local genomic context database.
Genomic interval120 181-120 618 nt438 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span120 181-120 618 ntGCF_000210595::NC_021018.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000210595::NC_021018.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_021018.1All displayed genes belong to this local TCS context.
Neighborhood span120 181-120 618 nt438 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
120 181 nt120 618 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CCU_RS00555GCF_000210595#CCU_RS00555
RRCheYCurrent focus
120 181-120 618 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210595#CCU_RS00555The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2247277
Simplified PFAM architecture for RROC_2247277
PFAM domain coverage: 115 / 145 aa (79.3%)
1 aa145 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[25-139]
- Domain count: 1
- Matched identifier: RROC_2247277
- Positioned domains: Response_reg 25-139 ; Response_reg 25-139
Cluster members and taxonomy
Representative gene: GCF_000210595#CCU_RS00555
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 751 585 · GCF_000210595
AssemblyASM21059v1 · Chromosomehaploid
Genome composition3 123 007 bp · 44,5% GCCoprococcus sp. ART55/1
Signal transduction countsGenes 69 · HK 34 · RR 33CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key