1 HisKA#1
470-536 aa · 67 aa · 6.8% of protein
Raw token
HisKA:470:1.39e-18:536:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CC1_RS15215
Histidine kinase, Hybrid
Coprococcus catus GD/7 · GCF_000210555
ClassHKTypeHybridLength983 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000210555#CC1_RS15215Stable P2CS identifier used across views.
GenomeGCF_000210555Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length983 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage416 / 983 aa (42.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,2 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa983 aa
Domain-by-domain annotation4 items
2 HATPase_c#2
584-701 aa · 118 aa · 12.0% of protein
Raw token
HATPase_c:584:2.01e-32:701:118:1093 Response_reg#3
720-833 aa · 114 aa · 11.6% of protein
Raw token
Response_reg:720:5.89e-19:833:114:1114 Response_reg#4
861-977 aa · 117 aa · 11.9% of protein
Raw token
Response_reg:861:2.33e-32:977:117:111- Raw architecture: HisKA:470:1.39e-18:536:67:64#HATPase_c:584:2.01e-32:701:118:109#Response_reg:720:5.89e-19:833:114:111#Response_reg:861:2.33e-32:977:117:111
- Domain description: 1 HisKA,1 HATPase_c,2 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000210555::NC_021009.1::G00042
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span3219051-3222002Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCC1_31860RefSeq proteinWP_208728814.1
Context group ID
GCF_000210555::NC_021009.1::G00042Context members
CC1_RS15215
Partner locus tags
CC1_RS15215
Partner old locus tags
CC1_31860
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_208728814.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCC1_RS15215Primary locus identifier stored in the genes table.
Old locus tagCC1_31860Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_021009.1Sequence record reported by the local genomic context database.
Genomic interval3 219 051-3 222 002 nt2 952 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span3 219 051-3 222 002 ntGCF_000210555::NC_021009.1::G00042
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000210555::NC_021009.1::G00042Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_021009.1All displayed genes belong to this local TCS context.
Neighborhood span3 219 051-3 222 002 nt2 952 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 219 051 nt3 222 002 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CC1_RS15215GCF_000210555#CC1_RS15215
HKHybridCurrent focus
3 219 051-3 222 002 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210555#CC1_RS15215The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0303786
Simplified PFAM architecture for HKOC_0303786
PFAM domain coverage: 414 / 983 aa (42.1%)
1 aa983 aa
HisKAHATPase_cResponse_regResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg + Response_reg
- Raw architecture: HisKA[470-536] | HATPase_c[584-700] | Response_reg[720-832] | Response_reg[861-977]
- Domain count: 4
- Matched identifier: HKOC_0303786
- Positioned domains: HisKA 470-536 ; HATPase_c 584-700 ; Response_reg 720-832 ; Response_reg 861-977
Cluster members and taxonomy
Representative gene: GCF_000210555#CC1_RS15215
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 717 962 · GCF_000210555
AssemblyASM21055v1 · Chromosomehaploid
Genome composition3 522 704 bp · 43,0% GCCoprococcus catus GD/7
Signal transduction countsGenes 74 · HK 39 · RR 33CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key