1 SBP_bac_3#1
69-270 aa · 202 aa · 21.1% of protein
Raw token
SBP_bac_3:69:1.97e-30:270:212:224P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CC1_RS15200
Histidine kinase, Hybrid
Coprococcus catus GD/7 · GCF_000210555
ClassHKTypeHybridLength959 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_000210555#CC1_RS15200Stable P2CS identifier used across views.
GenomeGCF_000210555Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
SBP_bac_3HisKAHATPase_cResponse_reg
Protein length959 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage709 / 959 aa (73.9%)Merged over positioned domains only.
Domain description2 SBP_bac_3,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa959 aa
Domain-by-domain annotation5 items
2 SBP_bac_3#2
299-502 aa · 204 aa · 21.3% of protein
Raw token
SBP_bac_3:299:0.0000000000325:502:221:2243 HisKA#3
583-648 aa · 66 aa · 6.9% of protein
Raw token
HisKA:583:1.04e-19:648:66:644 HATPase_c#4
695-813 aa · 119 aa · 12.4% of protein
Raw token
HATPase_c:695:6.7e-28:813:120:1095 Response_reg#5
836-953 aa · 118 aa · 12.3% of protein
Raw token
Response_reg:836:3.71e-29:953:118:111- Raw architecture: SBP_bac_3:69:1.97e-30:270:212:224#SBP_bac_3:299:0.0000000000325:502:221:224#HisKA:583:1.04e-19:648:66:64#HATPase_c:695:6.7e-28:813:120:109#Response_reg:836:3.71e-29:953:118:111
- Domain description: 2 SBP_bac_3,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_000210555::NC_021009.1::G00041
Group size33 locus tags listed below.
HK / RR2 / 1Counts resolved for the local TCS neighborhood.
Context span3210450-3217161Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCC1_31830RefSeq proteinWP_015515253.1
Context group ID
GCF_000210555::NC_021009.1::G00041Context members
CC1_RS15195CC1_RS15200CC1_RS15205
Partner locus tags
CC1_RS15195CC1_RS15200CC1_RS15205
Partner old locus tags
CC1_31830CC1_31840
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_015515253.1Primary protein accession used for annex mappings.
UniProt accessionD4JBK9Primary UniProt accession resolved in the annex database.
UniProt IDD4JBK9_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCC1_RS15200Primary locus identifier stored in the genes table.
Old locus tagCC1_31830Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_021009.1Sequence record reported by the local genomic context database.
Genomic interval3 212 733-3 215 612 nt2 880 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span3 210 450-3 217 161 ntGCF_000210555::NC_021009.1::G00041
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000210555::NC_021009.1::G00041Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_021009.1All displayed genes belong to this local TCS context.
Neighborhood span3 210 450-3 217 161 nt6 712 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 210 450 nt3 217 161 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
CC1_RS15195GCF_000210555#CC1_RS15195
HKHybrid
3 210 450-3 212 624 nt · Forward (+)
CC1_RS15200GCF_000210555#CC1_RS15200
HKHybridCurrent focus
3 212 733-3 215 612 nt · Forward (+)
CC1_RS15205GCF_000210555#CC1_RS15205
RRRpfG
3 215 662-3 217 161 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210555#CC1_RS15200The current gene is the representative for this cluster.
PFAM architectureSBP_bac_3 + SBP_bac_3 + HisKA + HATPase_c + Response_reg5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0318286
Simplified PFAM architecture for HKOC_0318286
PFAM domain coverage: 698 / 959 aa (72.8%)
1 aa959 aa
SBP_bac_3SBP_bac_3HisKAHATPase_cResponse_reg
- Simplified architecture: SBP_bac_3 + SBP_bac_3 + HisKA + HATPase_c + Response_reg
- Raw architecture: SBP_bac_3[66-258] | SBP_bac_3[299-502] | HisKA[583-648] | HATPase_c[696-812] | Response_reg[836-953]
- Domain count: 5
- Matched identifier: HKOC_0318286
- Positioned domains: SBP_bac_3 66-258 ; SBP_bac_3 299-502 ; HisKA 583-648 ; HATPase_c 696-812 ; Response_reg 836-953
Cluster members and taxonomy
Representative gene: GCF_000210555#CC1_RS15200
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 717 962 · GCF_000210555
AssemblyASM21055v1 · Chromosomehaploid
Genome composition3 522 704 bp · 43,0% GCCoprococcus catus GD/7
Signal transduction countsGenes 74 · HK 39 · RR 33CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key