1 HisKA#1
35-100 aa · 66 aa · 16.1% of protein
Raw token
HisKA:35:0.00000000000000127:100:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CC1_RS15170
Histidine kinase, Hybrid
Coprococcus catus GD/7 · GCF_000210555
ClassHKTypeHybridLength410 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000210555#CC1_RS15170Stable P2CS identifier used across views.
GenomeGCF_000210555Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length410 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage298 / 410 aa (72.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa410 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
147-264 aa · 118 aa · 28.8% of protein
Raw token
HATPase_c:147:1.19e-27:264:118:1093 Response_reg#3
287-400 aa · 114 aa · 27.8% of protein
Raw token
Response_reg:287:6.88e-29:400:114:111- Raw architecture: HisKA:35:0.00000000000000127:100:66:64#HATPase_c:147:1.19e-27:264:118:109#Response_reg:287:6.88e-29:400:114:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000210555::NC_021009.1::G00039
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span3203560-3204793Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCC1_31770RefSeq proteinWP_208728810.1
Context group ID
GCF_000210555::NC_021009.1::G00039Context members
CC1_RS15170
Partner locus tags
CC1_RS15170
Partner old locus tags
CC1_31770
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_208728810.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCC1_RS15170Primary locus identifier stored in the genes table.
Old locus tagCC1_31770Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_021009.1Sequence record reported by the local genomic context database.
Genomic interval3 203 560-3 204 793 nt1 234 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span3 203 560-3 204 793 ntGCF_000210555::NC_021009.1::G00039
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000210555::NC_021009.1::G00039Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_021009.1All displayed genes belong to this local TCS context.
Neighborhood span3 203 560-3 204 793 nt1 234 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 203 560 nt3 204 793 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CC1_RS15170GCF_000210555#CC1_RS15170
HKHybridCurrent focus
3 203 560-3 204 793 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210555#CC1_RS15170The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2354253
Simplified PFAM architecture for HKOC_2354253
PFAM domain coverage: 298 / 410 aa (72.7%)
1 aa410 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[35-100] | HATPase_c[148-264] | Response_reg[287-401]
- Domain count: 3
- Matched identifier: HKOC_2354253
- Positioned domains: HisKA 35-100 ; HATPase_c 148-264 ; Response_reg 287-401
Cluster members and taxonomy
Representative gene: GCF_000210555#CC1_RS15170
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 717 962 · GCF_000210555
AssemblyASM21055v1 · Chromosomehaploid
Genome composition3 522 704 bp · 43,0% GCCoprococcus catus GD/7
Signal transduction countsGenes 74 · HK 39 · RR 33CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key