1 SBP_bac_3#1
43-259 aa · 217 aa · 22.8% of protein
Raw token
SBP_bac_3:43:9.66e-27:259:229:224P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CC1_RS15140
Histidine kinase, Hybrid
Coprococcus catus GD/7 · GCF_000210555
ClassHKTypeHybridLength953 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000210555#CC1_RS15140Stable P2CS identifier used across views.
GenomeGCF_000210555Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
SBP_bac_3HisKAHATPase_cResponse_reg
Protein length953 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage721 / 953 aa (75.7%)Merged over positioned domains only.
Domain description2 SBP_bac_3,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa953 aa
Domain-by-domain annotation5 items
2 SBP_bac_3#2
281-482 aa · 202 aa · 21.2% of protein
Raw token
SBP_bac_3:281:4.32e-18:482:221:2243 HisKA#3
577-642 aa · 66 aa · 6.9% of protein
Raw token
HisKA:577:7.78e-18:642:66:644 HATPase_c#4
691-808 aa · 118 aa · 12.4% of protein
Raw token
HATPase_c:691:4.27e-27:808:118:1095 Response_reg#5
829-946 aa · 118 aa · 12.4% of protein
Raw token
Response_reg:829:2.52e-30:946:118:111- Raw architecture: SBP_bac_3:43:9.66e-27:259:229:224#SBP_bac_3:281:4.32e-18:482:221:224#HisKA:577:7.78e-18:642:66:64#HATPase_c:691:4.27e-27:808:118:109#Response_reg:829:2.52e-30:946:118:111
- Domain description: 2 SBP_bac_3,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000210555::NC_021009.1::G00038
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span3195166-3198027Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCC1_31710RefSeq proteinWP_015515245.1
Context group ID
GCF_000210555::NC_021009.1::G00038Context members
CC1_RS15140
Partner locus tags
CC1_RS15140
Partner old locus tags
CC1_31710
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_015515245.1Primary protein accession used for annex mappings.
UniProt accessionD4JBK1Primary UniProt accession resolved in the annex database.
UniProt IDD4JBK1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCC1_RS15140Primary locus identifier stored in the genes table.
Old locus tagCC1_31710Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_021009.1Sequence record reported by the local genomic context database.
Genomic interval3 195 166-3 198 027 nt2 862 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span3 195 166-3 198 027 ntGCF_000210555::NC_021009.1::G00038
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000210555::NC_021009.1::G00038Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_021009.1All displayed genes belong to this local TCS context.
Neighborhood span3 195 166-3 198 027 nt2 862 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 195 166 nt3 198 027 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CC1_RS15140GCF_000210555#CC1_RS15140
HKHybridCurrent focus
3 195 166-3 198 027 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210555#CC1_RS15140The current gene is the representative for this cluster.
PFAM architectureSBP_bac_3 + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0323485
Simplified PFAM architecture for HKOC_0323485
PFAM domain coverage: 499 / 953 aa (52.4%)
1 aa953 aa
SBP_bac_3HisKAHATPase_cResponse_reg
- Simplified architecture: SBP_bac_3 + HisKA + HATPase_c + Response_reg
- Raw architecture: SBP_bac_3[51-249] | HisKA[577-642] | HATPase_c[692-807] | Response_reg[829-946]
- Domain count: 4
- Matched identifier: HKOC_0323485
- Positioned domains: SBP_bac_3 51-249 ; HisKA 577-642 ; HATPase_c 692-807 ; Response_reg 829-946
Cluster members and taxonomy
Representative gene: GCF_000210555#CC1_RS15140
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 717 962 · GCF_000210555
AssemblyASM21055v1 · Chromosomehaploid
Genome composition3 522 704 bp · 43,0% GCCoprococcus catus GD/7
Signal transduction countsGenes 74 · HK 39 · RR 33CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key