1 GGDEF#1
199-346 aa · 148 aa · 14.1% of protein
Raw token
GGDEF:199:3.32e-19:346:157:160P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CC1_RS13440
Histidine kinase, Hybrid
Coprococcus catus GD/7 · GCF_000210555
ClassHKTypeHybridLength1048 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000210555#CC1_RS13440Stable P2CS identifier used across views.
GenomeGCF_000210555Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
GGDEFHisKAHATPase_cResponse_reg
Protein length1048 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage449 / 1048 aa (42.8%)Merged over positioned domains only.
Domain description1 GGDEF,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa1048 aa
Domain-by-domain annotation4 items
2 HisKA#2
673-739 aa · 67 aa · 6.4% of protein
Raw token
HisKA:673:0.00000000000000566:739:67:643 HATPase_c#3
788-905 aa · 118 aa · 11.3% of protein
Raw token
HATPase_c:788:2.17e-27:905:118:1094 Response_reg#4
927-1042 aa · 116 aa · 11.1% of protein
Raw token
Response_reg:927:7.7e-27:1042:116:111- Raw architecture: GGDEF:199:3.32e-19:346:157:160#HisKA:673:0.00000000000000566:739:67:64#HATPase_c:788:2.17e-27:905:118:109#Response_reg:927:7.7e-27:1042:116:111
- Domain description: 1 GGDEF,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000210555::NC_021009.1::G00026
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span2836323-2839661Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCC1_27980RefSeq proteinWP_015514935.1
Context group ID
GCF_000210555::NC_021009.1::G00026Context members
CC1_RS13440
Partner locus tags
CC1_RS13440
Partner old locus tags
CC1_27980
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_015514935.1Primary protein accession used for annex mappings.
UniProt accessionD4JAN7Primary UniProt accession resolved in the annex database.
UniProt IDD4JAN7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCC1_RS13440Primary locus identifier stored in the genes table.
Old locus tagCC1_27980Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_021009.1Sequence record reported by the local genomic context database.
Genomic interval2 836 323-2 839 661 nt3 339 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 836 323-2 839 661 ntGCF_000210555::NC_021009.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000210555::NC_021009.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_021009.1All displayed genes belong to this local TCS context.
Neighborhood span2 836 323-2 839 661 nt3 339 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 836 323 nt2 839 661 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CC1_RS13440GCF_000210555#CC1_RS13440
HKHybridCurrent focus
2 836 323-2 839 661 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210555#CC1_RS13440The current gene is the representative for this cluster.
PFAM architectureGGDEF + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0260852
Simplified PFAM architecture for HKOC_0260852
PFAM domain coverage: 446 / 1048 aa (42.6%)
1 aa1048 aa
GGDEFHisKAHATPase_cResponse_reg
- Simplified architecture: GGDEF + HisKA + HATPase_c + Response_reg
- Raw architecture: GGDEF[200-347] | HisKA[673-739] | HATPase_c[790-904] | Response_reg[927-1042]
- Domain count: 4
- Matched identifier: HKOC_0260852
- Positioned domains: GGDEF 200-347 ; HisKA 673-739 ; HATPase_c 790-904 ; Response_reg 927-1042
Cluster members and taxonomy
Representative gene: GCF_000210555#CC1_RS13440
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 717 962 · GCF_000210555
AssemblyASM21055v1 · Chromosomehaploid
Genome composition3 522 704 bp · 43,0% GCCoprococcus catus GD/7
Signal transduction countsGenes 74 · HK 39 · RR 33CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key