1 HAMP#1
201-268 aa · 68 aa · 13.8% of protein
Raw token
HAMP:201:0.00000000000537:268:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CC1_RS13245
Histidine kinase, Classic
Coprococcus catus GD/7 · GCF_000210555
ClassHKTypeClassicLength493 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_000210555#CC1_RS13245Stable P2CS identifier used across views.
GenomeGCF_000210555Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length493 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage259 / 493 aa (52.5%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa493 aa
Domain-by-domain annotation3 items
2 His_kinase#2
285-364 aa · 80 aa · 16.2% of protein
Raw token
His_kinase:285:3.46e-32:364:80:803 HATPase_c#3
381-491 aa · 111 aa · 22.5% of protein
Raw token
HATPase_c:381:0.0000000000103:491:115:109- Raw architecture: HAMP:201:0.00000000000537:268:68:69#His_kinase:285:3.46e-32:364:80:80#HATPase_c:381:0.0000000000103:491:115:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_000210555::NC_021009.1::G00025
Group size33 locus tags listed below.
HK / RR2 / 1Counts resolved for the local TCS neighborhood.
Context span2792269-2798063Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCC1_27590RefSeq proteinWP_015514907.1
Context group ID
GCF_000210555::NC_021009.1::G00025Context members
CC1_RS13235CC1_RS13240CC1_RS13245
Partner locus tags
CC1_RS13235CC1_RS13240CC1_RS13245
Partner old locus tags
CC1_27570CC1_27580CC1_27590
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_015514907.1Primary protein accession used for annex mappings.
UniProt accessionD4JAK5Primary UniProt accession resolved in the annex database.
UniProt IDD4JAK5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCC1_RS13245Primary locus identifier stored in the genes table.
Old locus tagCC1_27590Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_021009.1Sequence record reported by the local genomic context database.
Genomic interval2 796 582-2 798 063 nt1 482 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 792 269-2 798 063 ntGCF_000210555::NC_021009.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000210555::NC_021009.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_021009.1All displayed genes belong to this local TCS context.
Neighborhood span2 792 269-2 798 063 nt5 795 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 792 269 nt2 798 063 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
CC1_RS13235GCF_000210555#CC1_RS13235
HKHybrid
2 792 269-2 794 929 nt · Forward (+)
CC1_RS13240GCF_000210555#CC1_RS13240
RRunclassified
2 794 932-2 796 578 nt · Forward (+)
CC1_RS13245GCF_000210555#CC1_RS13245
HKClassicCurrent focus
2 796 582-2 798 063 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210555#CC1_RS13245The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1514899
Simplified PFAM architecture for HKOC_1514899
PFAM domain coverage: 237 / 493 aa (48.1%)
1 aa493 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[218-268] | His_kinase[286-363] | HATPase_c[383-490]
- Domain count: 3
- Matched identifier: HKOC_1514899
- Positioned domains: HAMP 218-268 ; His_kinase 286-363 ; HATPase_c 383-490
Cluster members and taxonomy
Representative gene: GCF_000210555#CC1_RS13245
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 717 962 · GCF_000210555
AssemblyASM21055v1 · Chromosomehaploid
Genome composition3 522 704 bp · 43,0% GCCoprococcus catus GD/7
Signal transduction countsGenes 74 · HK 39 · RR 33CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key