1 Response_reg#1
4-116 aa · 113 aa · 20.6% of protein
Raw token
Response_reg:4:2.34e-28:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CC1_RS13240
Response regulator, unclassified
Coprococcus catus GD/7 · GCF_000210555
ClassRRTypeunclassifiedLength548 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_000210555#CC1_RS13240Stable P2CS identifier used across views.
GenomeGCF_000210555Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length548 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage192 / 548 aa (35.0%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa548 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
454-494 aa · 41 aa · 7.5% of protein
Raw token
HTH_AraC:454:0.00000000027:494:41:423 HTH_AraC#3
506-543 aa · 38 aa · 6.9% of protein
Raw token
HTH_AraC:506:0.0000000853:543:38:42- Raw architecture: Response_reg:4:2.34e-28:116:113:111#HTH_AraC:454:0.00000000027:494:41:42#HTH_AraC:506:0.0000000853:543:38:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_000210555::NC_021009.1::G00025
Group size33 locus tags listed below.
HK / RR2 / 1Counts resolved for the local TCS neighborhood.
Context span2792269-2798063Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCC1_27580RefSeq proteinWP_015514906.1
Context group ID
GCF_000210555::NC_021009.1::G00025Context members
CC1_RS13235CC1_RS13240CC1_RS13245
Partner locus tags
CC1_RS13235CC1_RS13240CC1_RS13245
Partner old locus tags
CC1_27570CC1_27580CC1_27590
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_015514906.1Primary protein accession used for annex mappings.
UniProt accessionD4JAK4Primary UniProt accession resolved in the annex database.
UniProt IDD4JAK4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCC1_RS13240Primary locus identifier stored in the genes table.
Old locus tagCC1_27580Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_021009.1Sequence record reported by the local genomic context database.
Genomic interval2 794 932-2 796 578 nt1 647 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 792 269-2 798 063 ntGCF_000210555::NC_021009.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000210555::NC_021009.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_021009.1All displayed genes belong to this local TCS context.
Neighborhood span2 792 269-2 798 063 nt5 795 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 792 269 nt2 798 063 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
CC1_RS13235GCF_000210555#CC1_RS13235
HKHybrid
2 792 269-2 794 929 nt · Forward (+)
CC1_RS13240GCF_000210555#CC1_RS13240
RRunclassifiedCurrent focus
2 794 932-2 796 578 nt · Forward (+)
CC1_RS13245GCF_000210555#CC1_RS13245
HKClassic
2 796 582-2 798 063 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210555#CC1_RS13240The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GGDEF_2 + HTH_183 domains in the representative PFAM annotation.
PFAM architecture for RROC_0076169
Simplified PFAM architecture for RROC_0076169
PFAM domain coverage: 318 / 548 aa (58.0%)
1 aa548 aa
Response_regGGDEF_2HTH_18
- Simplified architecture: Response_reg + GGDEF_2 + HTH_18
- Raw architecture: Response_reg[4-116] | GGDEF_2[161-287] | HTH_18[467-544]
- Domain count: 3
- Matched identifier: RROC_0076169
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; GGDEF_2 161-287 ; GGDEF_2 161-287 ; HTH_18 467-544 ; HTH_18 467-544
Cluster members and taxonomy
Representative gene: GCF_000210555#CC1_RS13240
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 717 962 · GCF_000210555
AssemblyASM21055v1 · Chromosomehaploid
Genome composition3 522 704 bp · 43,0% GCCoprococcus catus GD/7
Signal transduction countsGenes 74 · HK 39 · RR 33CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key