1 HisKA#1
355-421 aa · 67 aa · 9.1% of protein
Raw token
HisKA:355:2.84e-16:421:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CC1_RS11690
Histidine kinase, Hybrid
Coprococcus catus GD/7 · GCF_000210555
ClassHKTypeHybridLength734 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000210555#CC1_RS11690Stable P2CS identifier used across views.
GenomeGCF_000210555Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length734 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage300 / 734 aa (40.9%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa734 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
470-587 aa · 118 aa · 16.1% of protein
Raw token
HATPase_c:470:7.83e-27:587:118:1093 Response_reg#3
613-727 aa · 115 aa · 15.7% of protein
Raw token
Response_reg:613:2.07e-26:727:115:111- Raw architecture: HisKA:355:2.84e-16:421:67:64#HATPase_c:470:7.83e-27:587:118:109#Response_reg:613:2.07e-26:727:115:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000210555::NC_021009.1::G00023
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span2468154-2470358Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCC1_24430RefSeq proteinWP_015514657.1
Context group ID
GCF_000210555::NC_021009.1::G00023Context members
CC1_RS11690
Partner locus tags
CC1_RS11690
Partner old locus tags
CC1_24430
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_015514657.1Primary protein accession used for annex mappings.
UniProt accessionD4J9S7Primary UniProt accession resolved in the annex database.
UniProt IDD4J9S7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCC1_RS11690Primary locus identifier stored in the genes table.
Old locus tagCC1_24430Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_021009.1Sequence record reported by the local genomic context database.
Genomic interval2 468 154-2 470 358 nt2 205 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 468 154-2 470 358 ntGCF_000210555::NC_021009.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000210555::NC_021009.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_021009.1All displayed genes belong to this local TCS context.
Neighborhood span2 468 154-2 470 358 nt2 205 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 468 154 nt2 470 358 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CC1_RS11690GCF_000210555#CC1_RS11690
HKHybridCurrent focus
2 468 154-2 470 358 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210555#CC1_RS11690The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0703896
Simplified PFAM architecture for HKOC_0703896
PFAM domain coverage: 299 / 734 aa (40.7%)
1 aa734 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[355-421] | HATPase_c[471-586] | Response_reg[611-726]
- Domain count: 3
- Matched identifier: HKOC_0703896
- Positioned domains: HisKA 355-421 ; HATPase_c 471-586 ; Response_reg 611-726
Cluster members and taxonomy
Representative gene: GCF_000210555#CC1_RS11690
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 717 962 · GCF_000210555
AssemblyASM21055v1 · Chromosomehaploid
Genome composition3 522 704 bp · 43,0% GCCoprococcus catus GD/7
Signal transduction countsGenes 74 · HK 39 · RR 33CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key