1 HAMP#1
167-236 aa · 70 aa · 15.0% of protein
Raw token
HAMP:167:0.00000000000101:236:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CC1_RS11425
Histidine kinase, Classic
Coprococcus catus GD/7 · GCF_000210555
ClassHKTypeClassicLength467 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000210555#CC1_RS11425Stable P2CS identifier used across views.
GenomeGCF_000210555Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length467 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage247 / 467 aa (52.9%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa467 aa
Domain-by-domain annotation3 items
2 HisKA#2
240-305 aa · 66 aa · 14.1% of protein
Raw token
HisKA:240:0.00000000000133:305:66:643 HATPase_c#3
353-463 aa · 111 aa · 23.8% of protein
Raw token
HATPase_c:353:8.84e-34:463:111:109- Raw architecture: HAMP:167:0.00000000000101:236:70:69#HisKA:240:0.00000000000133:305:66:64#HATPase_c:353:8.84e-34:463:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000210555::NC_021009.1::G00022
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2414735-2416856Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000210555::NC_021009.1::G00022Context members
CC1_RS11425CC1_RS11430
Partner locus tags
CC1_RS11425CC1_RS11430
Partner old locus tags
CC1_23870
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117527409.1Primary protein accession used for annex mappings.
UniProt accessionA0ABV1B4R4Primary UniProt accession resolved in the annex database.
UniProt IDA0ABV1B4R4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCC1_RS11425Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNC_021009.1Sequence record reported by the local genomic context database.
Genomic interval2 414 735-2 416 138 nt1 404 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 414 735-2 416 856 ntGCF_000210555::NC_021009.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000210555::NC_021009.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_021009.1All displayed genes belong to this local TCS context.
Neighborhood span2 414 735-2 416 856 nt2 122 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 414 735 nt2 416 856 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CC1_RS11425GCF_000210555#CC1_RS11425
HKClassicCurrent focus
2 414 735-2 416 138 nt · Reverse (-)
CC1_RS11430GCF_000210555#CC1_RS11430
RROmpR
2 416 167-2 416 856 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210555#CC1_RS11425The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1747881
Simplified PFAM architecture for HKOC_1747881
PFAM domain coverage: 230 / 467 aa (49.3%)
1 aa467 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[184-236] | HisKA[240-305] | HATPase_c[353-463]
- Domain count: 3
- Matched identifier: HKOC_1747881
- Positioned domains: HAMP 184-236 ; HisKA 240-305 ; HATPase_c 353-463
Cluster members and taxonomy
Representative gene: GCF_000210555#CC1_RS11425
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 717 962 · GCF_000210555
AssemblyASM21055v1 · Chromosomehaploid
Genome composition3 522 704 bp · 43,0% GCCoprococcus catus GD/7
Signal transduction countsGenes 74 · HK 39 · RR 33CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key