1 HisKA#1
124-192 aa · 69 aa · 19.3% of protein
Raw token
HisKA:124:0.0000000000000439:192:69:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CC1_RS10750
Histidine kinase, Classic
Coprococcus catus GD/7 · GCF_000210555
ClassHKTypeClassicLength357 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000210555#CC1_RS10750Stable P2CS identifier used across views.
GenomeGCF_000210555Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length357 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 357 aa (51.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa357 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
236-348 aa · 113 aa · 31.7% of protein
Raw token
HATPase_c:236:4.24e-22:348:113:109- Raw architecture: HisKA:124:0.0000000000000439:192:69:64#HATPase_c:236:4.24e-22:348:113:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000210555::NC_021009.1::G00019
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2275588-2277355Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCC1_22400RefSeq proteinWP_015514494.1
Context group ID
GCF_000210555::NC_021009.1::G00019Context members
CC1_RS10745CC1_RS10750
Partner locus tags
CC1_RS10745CC1_RS10750
Partner old locus tags
CC1_22400
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_015514494.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E2TM47Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E2TM47_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCC1_RS10750Primary locus identifier stored in the genes table.
Old locus tagCC1_22400Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_021009.1Sequence record reported by the local genomic context database.
Genomic interval2 276 282-2 277 355 nt1 074 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 275 588-2 277 355 ntGCF_000210555::NC_021009.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000210555::NC_021009.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_021009.1All displayed genes belong to this local TCS context.
Neighborhood span2 275 588-2 277 355 nt1 768 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 275 588 nt2 277 355 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CC1_RS10745GCF_000210555#CC1_RS10745
RROmpR
2 275 588-2 276 289 nt · Reverse (-)
CC1_RS10750GCF_000210555#CC1_RS10750
HKClassicCurrent focus
2 276 282-2 277 355 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210555#CC1_RS10750The current gene is the representative for this cluster.
PFAM architectureDUF4118 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2765106
Simplified PFAM architecture for HKOC_2765106
PFAM domain coverage: 285 / 357 aa (79.8%)
1 aa357 aa
DUF4118HisKAHATPase_c
- Simplified architecture: DUF4118 + HisKA + HATPase_c
- Raw architecture: DUF4118[14-116] | HisKA[125-192] | HATPase_c[237-350]
- Domain count: 3
- Matched identifier: HKOC_2765106
- Positioned domains: DUF4118 14-116 ; HisKA 125-192 ; HATPase_c 237-350
Cluster members and taxonomy
Representative gene: GCF_000210555#CC1_RS10750
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 717 962 · GCF_000210555
AssemblyASM21055v1 · Chromosomehaploid
Genome composition3 522 704 bp · 43,0% GCCoprococcus catus GD/7
Signal transduction countsGenes 74 · HK 39 · RR 33CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key