1 HAMP#1
167-234 aa · 68 aa · 14.6% of protein
Raw token
HAMP:167:0.0000000000000725:234:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CC1_RS09770
Histidine kinase, Classic
Coprococcus catus GD/7 · GCF_000210555
ClassHKTypeClassicLength467 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000210555#CC1_RS09770Stable P2CS identifier used across views.
GenomeGCF_000210555Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length467 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage236 / 467 aa (50.5%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa467 aa
Domain-by-domain annotation3 items
2 HisKA#2
245-305 aa · 61 aa · 13.1% of protein
Raw token
HisKA:245:0.00000000000484:305:61:643 HATPase_c#3
355-461 aa · 107 aa · 22.9% of protein
Raw token
HATPase_c:355:6.91e-27:461:107:109- Raw architecture: HAMP:167:0.0000000000000725:234:68:69#HisKA:245:0.00000000000484:305:61:64#HATPase_c:355:6.91e-27:461:107:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000210555::NC_021009.1::G00018
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2071197-2073256Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCC1_20170RefSeq proteinWP_015514309.1
Context group ID
GCF_000210555::NC_021009.1::G00018Context members
CC1_RS09770CC1_RS09775
Partner locus tags
CC1_RS09770CC1_RS09775
Partner old locus tags
CC1_20170CC1_20180
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_015514309.1Primary protein accession used for annex mappings.
UniProt accessionD4J8S0Primary UniProt accession resolved in the annex database.
UniProt IDD4J8S0_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCC1_RS09770Primary locus identifier stored in the genes table.
Old locus tagCC1_20170Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_021009.1Sequence record reported by the local genomic context database.
Genomic interval2 071 197-2 072 600 nt1 404 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 071 197-2 073 256 ntGCF_000210555::NC_021009.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000210555::NC_021009.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_021009.1All displayed genes belong to this local TCS context.
Neighborhood span2 071 197-2 073 256 nt2 060 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 071 197 nt2 073 256 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CC1_RS09770GCF_000210555#CC1_RS09770
HKClassicCurrent focus
2 071 197-2 072 600 nt · Reverse (-)
CC1_RS09775GCF_000210555#CC1_RS09775
RROmpR
2 072 597-2 073 256 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210555#CC1_RS09770The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1747880
Simplified PFAM architecture for HKOC_1747880
PFAM domain coverage: 217 / 467 aa (46.5%)
1 aa467 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[183-233] | HisKA[246-305] | HATPase_c[356-461]
- Domain count: 3
- Matched identifier: HKOC_1747880
- Positioned domains: HAMP 183-233 ; HisKA 246-305 ; HATPase_c 356-461
Cluster members and taxonomy
Representative gene: GCF_000210555#CC1_RS09770
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 717 962 · GCF_000210555
AssemblyASM21055v1 · Chromosomehaploid
Genome composition3 522 704 bp · 43,0% GCCoprococcus catus GD/7
Signal transduction countsGenes 74 · HK 39 · RR 33CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key