1 HAMP#1
215-284 aa · 70 aa · 12.9% of protein
Raw token
HAMP:215:0.00000000000535:284:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CC1_RS08195
Histidine kinase, Classic
Coprococcus catus GD/7 · GCF_000210555
ClassHKTypeClassicLength541 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000210555#CC1_RS08195Stable P2CS identifier used across views.
GenomeGCF_000210555Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length541 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage241 / 541 aa (44.5%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa541 aa
Domain-by-domain annotation3 items
2 HisKA#2
309-376 aa · 68 aa · 12.6% of protein
Raw token
HisKA:309:0.00000000000000469:376:68:643 HATPase_c#3
427-529 aa · 103 aa · 19.0% of protein
Raw token
HATPase_c:427:8.01e-20:529:104:109- Raw architecture: HAMP:215:0.00000000000535:284:70:69#HisKA:309:0.00000000000000469:376:68:64#HATPase_c:427:8.01e-20:529:104:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000210555::NC_021009.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1758386-1760703Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCC1_16960RefSeq proteinWP_015514019.1
Context group ID
GCF_000210555::NC_021009.1::G00016Context members
CC1_RS08190CC1_RS08195
Partner locus tags
CC1_RS08190CC1_RS08195
Partner old locus tags
CC1_16950CC1_16960
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_015514019.1Primary protein accession used for annex mappings.
UniProt accessionD4J7X9Primary UniProt accession resolved in the annex database.
UniProt IDD4J7X9_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCC1_RS08195Primary locus identifier stored in the genes table.
Old locus tagCC1_16960Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_021009.1Sequence record reported by the local genomic context database.
Genomic interval1 759 078-1 760 703 nt1 626 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 758 386-1 760 703 ntGCF_000210555::NC_021009.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000210555::NC_021009.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_021009.1All displayed genes belong to this local TCS context.
Neighborhood span1 758 386-1 760 703 nt2 318 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 758 386 nt1 760 703 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CC1_RS08190GCF_000210555#CC1_RS08190
RROmpR
1 758 386-1 759 066 nt · Forward (+)
CC1_RS08195GCF_000210555#CC1_RS08195
HKClassicCurrent focus
1 759 078-1 760 703 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210555#CC1_RS08195The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1317554
Simplified PFAM architecture for HKOC_1317554
PFAM domain coverage: 222 / 541 aa (41.0%)
1 aa541 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[232-284] | HisKA[309-374] | HATPase_c[428-530]
- Domain count: 3
- Matched identifier: HKOC_1317554
- Positioned domains: HAMP 232-284 ; HisKA 309-374 ; HATPase_c 428-530
Cluster members and taxonomy
Representative gene: GCF_000210555#CC1_RS08195
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 717 962 · GCF_000210555
AssemblyASM21055v1 · Chromosomehaploid
Genome composition3 522 704 bp · 43,0% GCCoprococcus catus GD/7
Signal transduction countsGenes 74 · HK 39 · RR 33CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key